Alternatives and similar repositories for pheweb-rg-pipeline

Users that are interested in pheweb-rg-pipeline are comparing it to the libraries listed below

• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆29Updated 3 years ago
• naim-panjwani / LocusFocus
  Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)
  ☆10Updated 7 months ago
• RebeccaFine / benchmarker
  Benchmarking gene and variant prioritization algorithms for GWAS data
  ☆15Updated 5 years ago
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆18Updated 2 years ago
• FinucaneLab / fine-mapping-inf
  Fine-mapping with infinitesimal effects
  ☆16Updated 2 months ago
• boxiangliu / locuscompare
  LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
  ☆21Updated 2 years ago
• huwenboshi / s-ldxr
  Stratified squared trans-ethnic genetic correlation
  ☆14Updated 3 years ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• beroukhim-lab / ascets
  This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…
  ☆16Updated last year
• shuangsong0110 / LDER
  We design a method for heritability estimation, namely LD Eigenvalue Regression (LDER), which extends the LDSC method and provides more a…
  ☆13Updated last year
• statgen / fivex
  Interactive eQTL visualizations
  ☆13Updated 2 years ago
• WansonChoi / HATK
  A collection of modules to process and analyze IMGT-HLA sequences.
  ☆29Updated 2 years ago
• xqwen / dap
  software package for integrative genetic association analysis
  ☆35Updated 2 years ago
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆22Updated 4 years ago
• siddhartha-kar / clonal-hematopoiesis
  This is the repository accompanying the pre-print titled, "Genome-wide analyses of 200,453 individuals yield new insights into the causes…
  ☆13Updated 3 years ago
• MRCIEU / PhenoSpD
  ☆18Updated 7 years ago
• MCorentin / vargen
  VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…
  ☆17Updated last year
• yuanzhongshang / GIFT
  ☆20Updated 8 months ago
• hakha-most / gwas_eqtl
  ☆17Updated last year
• ipdgc / Manhattan-Plotter
  This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3
  ☆13Updated 6 years ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆22Updated 7 years ago
• kjgleason / Primo
  Primo
  ☆16Updated 3 years ago
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated last year
• flemingtonlab / SpliceTools
  ☆17Updated last year
• Iuliana-Ionita-Laza / CARMA
  GWAS genetics Fine-mapping method
  ☆15Updated last year
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆30Updated 2 years ago
• caravagnalab / CNAqc
  CNAqc - Copy Number Alteration (CNA) Quality Check package
  ☆22Updated 2 months ago
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 5 months ago
• bhattacharya-a-bt / isotwas
  ☆23Updated 2 weeks ago
• Nealelab / UKBB_ldsc_scripts
  Scripts used for generating Neale Lab UKB results
  ☆20Updated 2 years ago