derijkp / scywalkerLinks
A program for the analysis of single cell nanopore long read data
☆19Updated 2 months ago
Alternatives and similar repositories for scywalker
Users that are interested in scywalker are comparing it to the libraries listed below
Sorting:
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆12Updated 2 weeks ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- ☆22Updated 5 months ago
- A Python library to visualize and analyze long-read transcriptomes☆62Updated last month
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆60Updated 7 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 7 months ago
- SingleCell Nanopore sequencing data analysis☆60Updated last week
- ☆28Updated 5 months ago
- ☆18Updated last month
- Genomic Association Tester☆31Updated 2 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Transposable Element Finder - Detection of active transposable elements from NGS data☆9Updated 2 weeks ago
- ☆36Updated 2 years ago
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆35Updated 2 weeks ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ☆19Updated 10 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Reconstruction of focal amplifications with long reads☆21Updated last week
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆17Updated 2 months ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆20Updated 3 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated last month
- A template repository for Snakemake pipepline(s) and a python command-line toolkit.☆28Updated 3 weeks ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last year
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆43Updated 4 months ago
- BISulfite-seq CUI Toolkit☆19Updated 3 weeks ago
- A VSCode extension pack for nf-core developers.☆15Updated 2 months ago
- ☆29Updated 10 months ago
- Automated Detection and Qualification of Differential Methylation☆14Updated last year