Alternatives and similar repositories for scywalker:

Users that are interested in scywalker are comparing it to the libraries listed below

• cortes-ciriano-lab / ReConPlot
  ☆22Updated 4 months ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆14Updated last year
• mortazavilab / cerberus
  ☆19Updated 8 months ago
• GoekeLab / bambu-singlecell-spatial
  Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu
  ☆11Updated last week
• Xinglab / rMATS-long
  ☆28Updated 4 months ago
• adamewing / tebreak
  Find and characterise transposable element insertions
  ☆21Updated last year
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• AmpliconSuite / CoRAL
  Reconstruction of focal amplifications with long reads
  ☆20Updated 2 weeks ago
• broadinstitute / longbow
  Annotation and segmentation of MAS-seq data
  ☆20Updated last year
• XiDsLab / TAGET
  ☆18Updated 2 years ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆41Updated last year
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated 7 months ago
• LappalainenLab / lorals
  ☆33Updated last year
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆59Updated 6 months ago
• thelovelab / rnaseqDTU
  RNA-seq workflow: differential transcript usage
  ☆21Updated last year
• ay-lab / HiCnv
  HiCnv is used to call copy number variations and breakpoints from Hi-C data
  ☆21Updated last year
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆61Updated last year
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆39Updated 3 weeks ago
• KolmogorovLab / minda
  ☆16Updated this week
• AndreasHeger / gat
  Genomic Association Tester
  ☆31Updated last year
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆57Updated 4 months ago
• TrinityCTAT / CTAT-LR-fusion
  fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector
  ☆18Updated last month
• LappalainenLab / lorals_paper_code
  ☆23Updated 2 years ago
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 5 years ago
• mortazavilab / lapa
  Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
  ☆30Updated last year
• dixonlab / hic_breakfinder
  ☆37Updated 5 years ago
• HenrikBengtsson / TopDom
  R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes
  ☆21Updated last year
• ans4013 / ScisorWiz
  ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data
  ☆16Updated 11 months ago
• wwylab / MuSE
  Somatic point mutation caller
  ☆28Updated 4 months ago
• akiomiyao / tef
  Transposable Element Finder - Detection of active transposable elements from NGS data
  ☆9Updated 3 weeks ago