Alternatives and similar repositories for scywalker

Users that are interested in scywalker are comparing it to the libraries listed below

• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆65Updated 3 weeks ago
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆63Updated 8 months ago
• Xinglab / rMATS-long
  ☆34Updated 2 months ago
• TrinityCTAT / CTAT-LR-fusion
  fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector
  ☆24Updated this week
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆64Updated last year
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆58Updated last year
• adamewing / tebreak
  Find and characterise transposable element insertions
  ☆20Updated 2 years ago
• nunofonseca / fastq_utils
  Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
  ☆37Updated 7 months ago
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• LHentges / LanceOtron
  ☆29Updated last year
• GoekeLab / bambu-singlecell-spatial
  Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu
  ☆15Updated 2 months ago
• deLaatLab / pipe4C
  4C-seq processing pipeline
  ☆26Updated 10 months ago
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆72Updated last month
• kundajelab / 3DChromatin_ReplicateQC
  Software to compute reproducibility and quality scores for Hi-C data
  ☆50Updated 6 years ago
• LuyiTian / FLAMES
  Full-length transcriptome splicing and mutation analysis
  ☆86Updated last year
• mortazavilab / lapa
  Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
  ☆34Updated 2 years ago
• ay-lab / dcHiC
  dcHiC: Differential compartment analysis for Hi-C datasets
  ☆74Updated 2 years ago
• amkozlov / cellphy
  CellPhy: accurate and fast probabilistic inference of single-cell phylogenies
  ☆20Updated last month
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆51Updated 3 years ago
• XiaoTaoWang / TADLib
  A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
  ☆45Updated 3 years ago
• CSOgroup / CALDER
  ☆22Updated 2 years ago
• broadinstitute / longbow
  Annotation and segmentation of MAS-seq data
  ☆20Updated 2 years ago
• DavidsonGroup / flexiplex
  The Flexible Demultiplexer
  ☆39Updated last month
• parklab / HiNT
  HiC for copy Number variation and Translocation detection
  ☆41Updated 4 years ago
• AndreasHeger / gat
  Genomic Association Tester
  ☆35Updated 2 years ago
• raphael-group / hatchet
  HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…
  ☆70Updated 11 months ago
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆102Updated last year
• cortes-ciriano-lab / ReConPlot
  ☆24Updated last year
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆41Updated 3 years ago
• Magdoll / SQANTI2
  SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3
  ☆38Updated 5 years ago