Alternatives and similar repositories for scywalker:

Users that are interested in scywalker are comparing it to the libraries listed below

• Xinglab / rMATS-long
  ☆28Updated 3 months ago
• mortazavilab / cerberus
  ☆18Updated 7 months ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆41Updated last year
• cortes-ciriano-lab / ReConPlot
  ☆21Updated 3 months ago
• XiDsLab / TAGET
  ☆17Updated 2 years ago
• adamewing / tebreak
  Find and characterise transposable element insertions
  ☆21Updated last year
• LappalainenLab / lorals
  ☆33Updated last year
• LappalainenLab / lorals_paper_code
  ☆23Updated 2 years ago
• broadinstitute / longbow
  Annotation and segmentation of MAS-seq data
  ☆20Updated last year
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆13Updated 11 months ago
• deLaatLab / pipe4C
  4C-seq processing pipeline
  ☆23Updated last week
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• dixonlab / hic_breakfinder
  ☆36Updated 5 years ago
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆59Updated 5 months ago
• AndreasHeger / gat
  Genomic Association Tester
  ☆30Updated last year
• thelovelab / rnaseqDTU
  RNA-seq workflow: differential transcript usage
  ☆21Updated last year
• akiomiyao / tef
  Transposable Element Finder - Detection of active transposable elements from NGS data
  ☆9Updated 2 months ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆59Updated last year
• GoekeLab / bambu-singlecell-spatial
  Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu
  ☆9Updated last month
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆30Updated last month
• fakedrtom / SVAFotate
  ☆39Updated 6 months ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆34Updated last week
• AmpliconSuite / CoRAL
  Reconstruction of focal amplifications with long reads
  ☆18Updated last week
• TrinityCTAT / CTAT-LR-fusion
  fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector
  ☆17Updated last month
• ay-lab / HiCnv
  HiCnv is used to call copy number variations and breakpoints from Hi-C data
  ☆21Updated 11 months ago
• maxplanck-ie / HiCAssembler
  Software to assemble contigs/scaffolds into chromosomes using Hi-C data
  ☆28Updated 6 months ago
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆45Updated 2 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆23Updated last year
• huishenlab / biscuit
  BISulfite-seq CUI Toolkit
  ☆19Updated 3 months ago
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆54Updated 5 months ago