☆82Dec 11, 2023Updated 2 years ago
Alternatives and similar repositories for subset-bam
Users that are interested in subset-bam are comparing it to the libraries listed below
Sorting:
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Jan 4, 2023Updated 3 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Feb 8, 2023Updated 3 years ago
- A Shiny web app for mapping datasets using Seurat v4☆144Nov 5, 2024Updated last year
- software to detect doublets☆96Dec 28, 2024Updated last year
- ☆26May 16, 2025Updated 9 months ago
- ☆17Oct 3, 2022Updated 3 years ago
- Convert 10x BAM files to the original FASTQs compatible with 10x pipelines☆66Feb 10, 2026Updated 3 weeks ago
- kallisto index tag extractor☆20Jul 6, 2019Updated 6 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Dec 2, 2020Updated 5 years ago
- Single-cell immune repertoire trajectory analysis in R☆11Aug 8, 2025Updated 6 months ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 5 years ago
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Oct 13, 2025Updated 4 months ago
- Efficient genotyping bi-allelic SNPs on single cells☆157Oct 30, 2025Updated 4 months ago
- Cluster Identity Predictor (R package implementation)☆21Mar 8, 2022Updated 3 years ago
- Single-cell Consensus Clusters of Encoded Subspaces☆14Aug 14, 2023Updated 2 years ago
- Code used for the single-cell RNA-Seq batch effects paper☆10Sep 25, 2017Updated 8 years ago
- ☆13Dec 14, 2023Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 6 years ago
- Genetic multiplexing of barcoded single cell RNA-seq☆133Jul 1, 2024Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆39Nov 14, 2022Updated 3 years ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆622Oct 10, 2025Updated 4 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Jan 6, 2021Updated 5 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- ☆17Apr 9, 2021Updated 4 years ago
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆383Updated this week
- A database of useful gene signatures for single-cell analysis☆28May 19, 2025Updated 9 months ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Nov 16, 2021Updated 4 years ago
- Single-Cell Genotyping Tool☆216Oct 2, 2023Updated 2 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆525Mar 21, 2025Updated 11 months ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Dec 23, 2019Updated 6 years ago
- Interfaces for HDF5-based Single Cell File Formats☆174Nov 4, 2023Updated 2 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆122Dec 5, 2025Updated 2 months ago
- A tool for detecting somatic variants in single cell data☆217Sep 15, 2024Updated last year
- The Single-Cell Pathology Landscape of Breast Cancer☆27Jan 14, 2020Updated 6 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆29Oct 10, 2025Updated 4 months ago
- Gene group activity utility functions for Scanpy☆100Dec 21, 2024Updated last year
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated last year
- R package of CSOmap(developing☆13Mar 22, 2022Updated 3 years ago
- Codes used in LISTA project.☆15Apr 17, 2024Updated last year