Cell type prioritization in single-cell data
☆138Oct 23, 2024Updated last year
Alternatives and similar repositories for Augur
Users that are interested in Augur are comparing it to the libraries listed below
Sorting:
- R package implementation of Milo for testing for differential abundance in KNN graphs☆421Sep 4, 2025Updated 6 months ago
- ☆182May 6, 2025Updated 10 months ago
- A Bayesian model for compositional single-cell data analysis☆188Jan 13, 2026Updated last month
- Signature Analysis and Visualization for Single-Cell RNA-seq☆175Jun 10, 2024Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆233Aug 7, 2024Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆315Nov 1, 2022Updated 3 years ago
- Interpretation of cell states using reference single-cell maps☆312Dec 19, 2025Updated 2 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆219Feb 26, 2024Updated 2 years ago
- NicheNet: predict active ligand-target links between interacting cells☆620Nov 12, 2025Updated 3 months ago
- R package for semi-supervised single-cell data integration☆96Jan 27, 2026Updated last month
- R package to visualize gene expression data based on weighted kernel density estimation☆112Feb 6, 2026Updated last month
- Methods for detecting doublets in single-cell sequencing data☆231Feb 12, 2026Updated 3 weeks ago
- Multi-sample multi-group scRNA-seq analysis tools☆218Feb 16, 2026Updated 2 weeks ago
- Scissor package☆253May 10, 2024Updated last year
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆226May 29, 2025Updated 9 months ago
- A tool for removing doublets from single-cell RNA-seq data☆75Dec 2, 2020Updated 5 years ago
- High dimensional weighted gene co-expression network analysis☆465Feb 13, 2026Updated 3 weeks ago
- Easy single cell analysis platform for enrichment☆215Jan 4, 2026Updated 2 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆415Aug 22, 2025Updated 6 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆182Aug 12, 2025Updated 6 months ago
- A package to help convert different single-cell data formats to each other☆458Feb 20, 2026Updated 2 weeks ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆622Oct 10, 2025Updated 4 months ago
- R package to infer biological activities from omics data using a collection of methods.☆286Dec 16, 2025Updated 2 months ago
- CellRank: dynamics from multi-view single-cell data☆431Updated this week
- Quantifying metabolism activity at the single-cell resolution☆153Feb 18, 2026Updated 2 weeks ago
- Methods to discover gene programs on single-cell data☆174Sep 26, 2025Updated 5 months ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆65Oct 16, 2025Updated 4 months ago
- AUCell: score single cells with gene regulatory networks☆185Mar 9, 2024Updated last year
- ☆129Feb 11, 2024Updated 2 years ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆143Nov 10, 2023Updated 2 years ago
- A toolkit for single-cell immune profiling☆363Updated this week
- Reference mapping for single-cell genomics☆399Dec 2, 2025Updated 3 months ago
- Gene set scoring for single-cell data☆184Feb 11, 2026Updated 3 weeks ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆324Apr 23, 2024Updated last year
- TRAjectory-based Differential Expression analysis for SEQuencing data☆290Jun 17, 2025Updated 8 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆223Dec 26, 2025Updated 2 months ago
- ☆271Oct 13, 2025Updated 4 months ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Nov 9, 2023Updated 2 years ago
- Multi-subject Single Cell Deconvolution☆287Mar 4, 2024Updated 2 years ago