Alternatives and similar repositories for Augur:

Users that are interested in Augur are comparing it to the libraries listed below

• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆110Updated 5 months ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆143Updated 3 months ago
• carmonalab / GeneNMF
  Methods to discover gene programs on single-cell data
  ☆99Updated 2 months ago
• quadbio / Pando
  Multiome GRN inference.
  ☆115Updated 9 months ago
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆155Updated last year
• neurorestore / Libra
  ☆162Updated 5 months ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆87Updated 3 years ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆102Updated 2 years ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆138Updated last month
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆99Updated 11 months ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆159Updated 2 months ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆102Updated last week
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆159Updated 2 weeks ago
• martinjzhang / scDRS
  Single-cell disease relevance score (scDRS)
  ☆119Updated 3 months ago
• AntonioDeFalco / SCEVAN
  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …
  ☆97Updated this week
• chuiqin / irGSEA
  The integration of single cell rank-based gene set enrichment analysis
  ☆119Updated 6 months ago
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆123Updated 2 months ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆79Updated last year
• PaulingLiu / ROGUE
  Assessing the purity of single cell population
  ☆118Updated 2 years ago
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆121Updated 3 months ago
• wu-yc / scMetabolism
  Quantifying metabolism activity at the single-cell resolution
  ☆127Updated 6 months ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆96Updated last week
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆139Updated 3 years ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆136Updated 3 years ago
• dpeerlab / SEACells
  SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
  ☆154Updated 7 months ago
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆71Updated 2 months ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆192Updated 6 months ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆176Updated this week
• prabhakarlab / Banksy
  BANKSY: spatial clustering
  ☆86Updated 6 months ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆93Updated last year