neurorestore / AugurLinks
Cell type prioritization in single-cell data
☆125Updated 11 months ago
Alternatives and similar repositories for Augur
Users that are interested in Augur are comparing it to the libraries listed below
Sorting:
- Gene set scoring for single-cell data☆165Updated this week
- Significance analysis for clustering single-cell RNA-sequencing data☆119Updated last year
- AUCell: score single cells with gene regulatory networks☆169Updated last year
- A Bayesian model for compositional single-cell data analysis☆176Updated 2 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆105Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆110Updated 2 years ago
- Methods to discover gene programs on single-cell data☆149Updated last week
- Multiome GRN inference.☆127Updated last year
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆208Updated last month
- Assessing the purity of single cell population☆136Updated 3 years ago
- The integration of single cell rank-based gene set enrichment analysis☆133Updated 3 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆163Updated last month
- Single Cell Cluster Evaluation☆97Updated 4 years ago
- Conversion between scRNA-seq objects☆187Updated last month
- ☆176Updated 4 months ago
- Fast Wilcoxon and auROC☆189Updated 10 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Updated 2 years ago
- Create stacked violin plot☆51Updated 3 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆112Updated last month
- R package for semi-supervised single-cell data integration☆90Updated last month
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆109Updated 5 months ago
- reticulate-free single cell format conversion☆187Updated last week
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Some tools for plotting single-cell data☆175Updated 4 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆124Updated 2 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated 2 months ago
- Methods for detecting doublets in single-cell sequencing data☆209Updated last month
- BANKSY: spatial clustering☆121Updated last month