neurorestore / AugurLinks
Cell type prioritization in single-cell data
☆124Updated 10 months ago
Alternatives and similar repositories for Augur
Users that are interested in Augur are comparing it to the libraries listed below
Sorting:
- AUCell: score single cells with gene regulatory networks☆166Updated last year
- Significance analysis for clustering single-cell RNA-sequencing data☆118Updated last year
- Gene set scoring for single-cell data☆160Updated 4 months ago
- Multiome GRN inference.☆127Updated last year
- A Bayesian model for compositional single-cell data analysis☆173Updated 2 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆156Updated last month
- Single Cell Cluster Evaluation☆97Updated 4 years ago
- Methods to discover gene programs on single-cell data☆145Updated this week
- R package to visualize gene expression data based on weighted kernel density estimation☆103Updated last year
- ☆174Updated 4 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆207Updated last month
- Assessing the purity of single cell population☆135Updated 3 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆108Updated 2 years ago
- Conversion between scRNA-seq objects☆184Updated 2 weeks ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆111Updated 2 weeks ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆109Updated 4 months ago
- R package for semi-supervised single-cell data integration☆88Updated last month
- The integration of single cell rank-based gene set enrichment analysis☆131Updated 2 months ago
- Fast Wilcoxon and auROC☆188Updated 10 months ago
- Some tools for plotting single-cell data☆175Updated 3 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆214Updated last year
- reticulate-free single cell format conversion☆184Updated last month
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆84Updated last year
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 10 months ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- ☆62Updated 6 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆121Updated last month
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆78Updated last month
- Methods to compute Local Inverse Simpson's Index (LISI)☆68Updated 4 years ago