Alternatives and similar repositories for SPATA2:

Users that are interested in SPATA2 are comparing it to the libraries listed below

• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆143Updated 4 months ago
• quadbio / Pando
  Multiome GRN inference.
  ☆119Updated 10 months ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆177Updated 2 weeks ago
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆156Updated last year
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆122Updated 3 months ago
• MarcElosua / SPOTlight
  Spatial Transcriptomics Capture Location Deconvolution
  ☆172Updated 11 months ago
• carmonalab / GeneNMF
  Methods to discover gene programs on single-cell data
  ☆102Updated 3 months ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆138Updated last month
• edward130603 / BayesSpace
  Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.
  ☆123Updated 4 months ago
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆99Updated last year
• Nanostring-Biostats / CosMx-Analysis-Scratch-Space
  This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…
  ☆56Updated this week
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆175Updated 3 months ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆103Updated 2 years ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆112Updated 5 months ago
• pachterlab / voyager
  From geospatial to spatial -omics
  ☆87Updated last month
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆112Updated 4 months ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆159Updated last week
• ludvigla / semla
  ☆72Updated this week
• JEFworks-Lab / MERINGUE
  characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…
  ☆67Updated 2 years ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆193Updated 6 months ago
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆144Updated 11 months ago
• wu-yc / scMetabolism
  Quantifying metabolism activity at the single-cell resolution
  ☆131Updated 6 months ago
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆161Updated last month
• martinjzhang / scDRS
  Single-cell disease relevance score (scDRS)
  ☆120Updated 4 months ago
• PaulingLiu / ROGUE
  Assessing the purity of single cell population
  ☆121Updated 2 years ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆92Updated 3 years ago
• chuiqin / irGSEA
  The integration of single cell rank-based gene set enrichment analysis
  ☆119Updated 7 months ago
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆68Updated last month
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆105Updated last month
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆69Updated 6 months ago