A Toolbox for Spatial Transcriptomics Analysis
☆167May 6, 2025Updated last year
Alternatives and similar repositories for SPATA2
Users that are interested in SPATA2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆100May 4, 2026Updated 2 weeks ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆457Jan 22, 2026Updated 3 months ago
- Multiview Intercellular SpaTial modeling framework☆72Jan 15, 2026Updated 4 months ago
- Spatial Transcriptomics Capture Location Deconvolution☆207Oct 20, 2025Updated 7 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆114Feb 6, 2026Updated 3 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- High dimensional weighted gene co-expression network analysis☆473Mar 13, 2026Updated 2 months ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆179Jan 8, 2026Updated 4 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆247May 14, 2026Updated last week
- Methods for detecting doublets in single-cell sequencing data☆251Updated this week
- BANKSY: spatial clustering☆147May 2, 2026Updated 2 weeks ago
- Interpretation of cell states using reference single-cell maps☆319Dec 19, 2025Updated 5 months ago
- R package to infer biological activities from omics data using a collection of methods.☆295Dec 16, 2025Updated 5 months ago
- SPATA Package for spatial gene expression analysis☆21May 6, 2022Updated 4 years ago
- Methods to discover gene programs on single-cell data☆184Apr 1, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- LIANA: a LIgand-receptor ANalysis frAmework☆240Aug 7, 2024Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆186Aug 12, 2025Updated 9 months ago
- ☆284Oct 13, 2025Updated 7 months ago
- Join subcellular Visium HD bins into cells☆142May 8, 2026Updated last week
- AUCell: score single cells with gene regulatory networks☆191Mar 9, 2024Updated 2 years ago
- Spatial transcriptomics of heart tissue☆109Oct 7, 2023Updated 2 years ago
- Spatial omics analysis toolbox☆374Updated this week
- Easy single cell analysis platform for enrichment☆223Apr 3, 2026Updated last month
- ☆136Apr 24, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Spatial Cellular Estimator for Tumors☆63May 5, 2026Updated 2 weeks ago
- Gene group activity utility functions for Scanpy☆103Dec 21, 2024Updated last year
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆289Updated this week
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆29Sep 6, 2024Updated last year
- From geospatial to spatial -omics☆103May 8, 2026Updated last week
- Scripts from the GBM cellular states paper☆21Feb 24, 2021Updated 5 years ago
- Construct Tumor Transition Zone Microenvironment☆58Jun 25, 2025Updated 10 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆432May 11, 2026Updated last week
- Deconvolution of spatial transcriptomics at single-cell resolution☆20Mar 25, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Assessing the purity of single cell population☆147Jun 3, 2022Updated 3 years ago
- ☆73May 28, 2025Updated 11 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆607Mar 4, 2026Updated 2 months ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆56Jan 6, 2025Updated last year
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆642Mar 11, 2026Updated 2 months ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆247May 5, 2026Updated 2 weeks ago
- Extension of SpatialExperiment with sf☆57May 6, 2026Updated 2 weeks ago