Alternatives and similar repositories for SPATA2

Users that are interested in SPATA2 are comparing it to the libraries listed below

• quadbio / Pando
  Multiome GRN inference.
  ☆124Updated last year
• edward130603 / BayesSpace
  Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.
  ☆144Updated last month
• MarcElosua / SPOTlight
  Spatial Transcriptomics Capture Location Deconvolution
  ☆186Updated last month
• ludvigla / semla
  ☆88Updated 2 weeks ago
• JEFworks-Lab / MERINGUE
  characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…
  ☆77Updated 3 years ago
• JEFworks-Lab / STdeconvolve
  Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data
  ☆135Updated last month
• carmonalab / GeneNMF
  Methods to discover gene programs on single-cell data
  ☆130Updated last week
• Nanostring-Biostats / CosMx-Analysis-Scratch-Space
  This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…
  ☆71Updated last week
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆169Updated 2 years ago
• pachterlab / voyager
  From geospatial to spatial -omics
  ☆95Updated 4 months ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆211Updated 11 months ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆200Updated last month
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆154Updated 2 months ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆149Updated 6 months ago
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆122Updated 8 months ago
• saezlab / mistyR
  Multiview Intercellular SpaTial modeling framework
  ☆61Updated last month
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆105Updated 2 years ago
• saezlab / OmnipathR
  R client for the OmniPath web service
  ☆137Updated this week
• wu-yc / scMetabolism
  Quantifying metabolism activity at the single-cell resolution
  ☆136Updated 3 weeks ago
• prabhakarlab / Banksy
  BANKSY: spatial clustering
  ☆117Updated 3 weeks ago
• zktuong / ktplots
  Some tools for plotting single-cell data
  ☆172Updated 2 months ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆178Updated last month
• CahanLab / singleCellNet
  SingleCellNet: classify single cells across species and platforms
  ☆137Updated last year
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆117Updated 10 months ago
• PaulingLiu / ROGUE
  Assessing the purity of single cell population
  ☆130Updated 3 years ago
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆159Updated last year
• Nanostring-Biostats / CellProfileLibrary
  ☆31Updated 2 months ago
• 10XGenomics / HumanColonCancer_VisiumHD
  Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…
  ☆84Updated last month
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆184Updated last month
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆186Updated 8 months ago