Alternatives and similar repositories for SPATA2

Users that are interested in SPATA2 are comparing it to the libraries listed below

• ludvigla / semla
  ☆97Updated 3 months ago
• quadbio / Pando
  Multiome GRN inference.
  ☆131Updated last year
• Nanostring-Biostats / CosMx-Analysis-Scratch-Space
  This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…
  ☆89Updated 2 weeks ago
• JEFworks-Lab / STdeconvolve
  Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data
  ☆151Updated 5 months ago
• MarcElosua / SPOTlight
  Spatial Transcriptomics Capture Location Deconvolution
  ☆199Updated 2 months ago
• carmonalab / GeneNMF
  Methods to discover gene programs on single-cell data
  ☆168Updated 3 months ago
• abelson-lab / scATOMIC
  Pan-Cancer Single Cell Classifier
  ☆83Updated last year
• saezlab / mistyR
  Multiview Intercellular SpaTial modeling framework
  ☆71Updated 7 months ago
• saezlab / OmnipathR
  R client for the OmniPath web service
  ☆149Updated last month
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆132Updated last year
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆185Updated 2 years ago
• pachterlab / voyager
  From geospatial to spatial -omics
  ☆100Updated last month
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆180Updated last year
• JEFworks-Lab / MERINGUE
  characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…
  ☆81Updated 3 years ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆213Updated 2 weeks ago
• zktuong / ktplots
  Some tools for plotting single-cell data
  ☆176Updated 7 months ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆176Updated 2 months ago
• prabhakarlab / Banksy
  BANKSY: spatial clustering
  ☆132Updated 2 months ago
• edward130603 / BayesSpace
  Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.
  ☆163Updated this week
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆124Updated last year
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆113Updated 2 months ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆227Updated last year
• YosefLab / Compass
  In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes
  ☆119Updated 2 months ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆134Updated 5 months ago
• saezlab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆106Updated 2 years ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆113Updated 2 years ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆94Updated 3 weeks ago
• PaulingLiu / ROGUE
  Assessing the purity of single cell population
  ☆140Updated 3 years ago
• xleizi / easySCF
  ☆48Updated 2 months ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆98Updated 4 years ago