A Toolbox for Spatial Transcriptomics Analysis
☆165May 6, 2025Updated 11 months ago
Alternatives and similar repositories for SPATA2
Users that are interested in SPATA2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆99Mar 20, 2026Updated 3 weeks ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆448Jan 22, 2026Updated 2 months ago
- Multiview Intercellular SpaTial modeling framework☆72Jan 15, 2026Updated 2 months ago
- Spatial Transcriptomics Capture Location Deconvolution☆204Oct 20, 2025Updated 5 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆112Feb 6, 2026Updated 2 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- High dimensional weighted gene co-expression network analysis☆469Mar 13, 2026Updated 3 weeks ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆174Jan 8, 2026Updated 3 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆233Mar 17, 2026Updated 3 weeks ago
- Methods for detecting doublets in single-cell sequencing data☆241Feb 12, 2026Updated last month
- BANKSY: spatial clustering☆139Oct 15, 2025Updated 5 months ago
- Interpretation of cell states using reference single-cell maps☆315Dec 19, 2025Updated 3 months ago
- R package to infer biological activities from omics data using a collection of methods.☆289Dec 16, 2025Updated 3 months ago
- SPATA Package for spatial gene expression analysis☆21May 6, 2022Updated 3 years ago
- Methods to discover gene programs on single-cell data☆179Apr 1, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- LIANA: a LIgand-receptor ANalysis frAmework☆238Aug 7, 2024Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆184Aug 12, 2025Updated 8 months ago
- Join subcellular Visium HD bins into cells☆138Nov 4, 2025Updated 5 months ago
- ☆277Oct 13, 2025Updated 5 months ago
- AUCell: score single cells with gene regulatory networks☆190Mar 9, 2024Updated 2 years ago
- Spatial transcriptomics of heart tissue☆108Oct 7, 2023Updated 2 years ago
- Spatial omics analysis toolbox☆368Apr 3, 2026Updated last week
- Easy single cell analysis platform for enrichment☆218Apr 3, 2026Updated last week
- ☆134Apr 24, 2024Updated last year
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Gene group activity utility functions for Scanpy☆101Dec 21, 2024Updated last year
- Spatial Cellular Estimator for Tumors☆62Mar 23, 2026Updated 2 weeks ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆284Updated this week
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆29Sep 6, 2024Updated last year
- From geospatial to spatial -omics☆102Mar 18, 2026Updated 3 weeks ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆424Sep 4, 2025Updated 7 months ago
- Scripts from the GBM cellular states paper☆21Feb 24, 2021Updated 5 years ago
- Construct Tumor Transition Zone Microenvironment☆57Jun 25, 2025Updated 9 months ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆20Mar 25, 2026Updated 2 weeks ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Assessing the purity of single cell population☆144Jun 3, 2022Updated 3 years ago
- ☆72May 28, 2025Updated 10 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆578Mar 4, 2026Updated last month
- Extension of SpatialExperiment with sf☆57Updated this week
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆633Mar 11, 2026Updated last month
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆57Jan 6, 2025Updated last year
- A novel machine learning pipeline to analyse spatial transcriptomics data☆244Mar 12, 2026Updated last month