A Toolbox for Spatial Transcriptomics Analysis
☆169May 6, 2025Updated last year
Alternatives and similar repositories for SPATA2
Users that are interested in SPATA2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆101May 4, 2026Updated last month
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆467Jan 22, 2026Updated 5 months ago
- Multiview Intercellular SpaTial modeling framework☆73Jan 15, 2026Updated 5 months ago
- Spatial Transcriptomics Capture Location Deconvolution☆210Oct 20, 2025Updated 8 months ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆181Jan 8, 2026Updated 5 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- R package to visualize gene expression data based on weighted kernel density estimation☆115Feb 6, 2026Updated 4 months ago
- High dimensional weighted gene co-expression network analysis☆481Jun 16, 2026Updated 2 weeks ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆259Jun 19, 2026Updated last week
- Methods for detecting doublets in single-cell sequencing data☆254Jun 23, 2026Updated last week
- BANKSY: spatial clustering☆152May 30, 2026Updated last month
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 6 months ago
- R package to infer biological activities from omics data using a collection of methods.☆300Dec 16, 2025Updated 6 months ago
- SPATA Package for spatial gene expression analysis☆21May 6, 2022Updated 4 years ago
- Methods to discover gene programs on single-cell data☆192Jun 5, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- LIANA: a LIgand-receptor ANalysis frAmework☆243Aug 7, 2024Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆191Aug 12, 2025Updated 10 months ago
- ☆293Jun 16, 2026Updated 2 weeks ago
- Join subcellular Visium HD bins into cells☆143May 8, 2026Updated last month
- AUCell: score single cells with gene regulatory networks☆196Mar 9, 2024Updated 2 years ago
- Spatial transcriptomics of heart tissue☆111Oct 7, 2023Updated 2 years ago
- Spatial omics analysis toolbox☆378Jun 2, 2026Updated 3 weeks ago
- Easy single cell analysis platform for enrichment☆227Apr 3, 2026Updated 2 months ago
- ☆139Apr 24, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Spatial Cellular Estimator for Tumors☆65May 5, 2026Updated last month
- Gene group activity utility functions for Scanpy☆108Dec 21, 2024Updated last year
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆290Jun 17, 2026Updated 2 weeks ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆29Sep 6, 2024Updated last year
- From geospatial to spatial -omics☆103May 8, 2026Updated last month
- Construct Tumor Transition Zone Microenvironment☆58Jun 25, 2025Updated last year
- Scripts from the GBM cellular states paper☆21Feb 24, 2021Updated 5 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆436May 11, 2026Updated last month
- Deconvolution of spatial transcriptomics at single-cell resolution☆22Mar 25, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Assessing the purity of single cell population☆151Jun 3, 2022Updated 4 years ago
- ☆74May 28, 2025Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆630Mar 4, 2026Updated 3 months ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆56Jan 6, 2025Updated last year
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆653Mar 11, 2026Updated 3 months ago
- Extension of SpatialExperiment with sf☆57May 6, 2026Updated last month
- Multi-Omics integration and VIsualization in Cancer Subtyping☆147Jul 19, 2021Updated 4 years ago