theMILOlab / SPATA2Links
A Toolbox for Spatial Transcriptomics Analysis
☆155Updated 3 months ago
Alternatives and similar repositories for SPATA2
Users that are interested in SPATA2 are comparing it to the libraries listed below
Sorting:
- ☆88Updated last month
- Multiome GRN inference.☆125Updated last year
- Methods to discover gene programs on single-cell data☆140Updated last month
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆148Updated 3 weeks ago
- Spatial Transcriptomics Capture Location Deconvolution☆186Updated 2 months ago
- Gene set scoring for single-cell data☆158Updated 3 months ago
- Some tools for plotting single-cell data☆173Updated 2 months ago
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆75Updated 2 weeks ago
- From geospatial to spatial -omics☆95Updated 5 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆78Updated 3 years ago
- A Bayesian model for compositional single-cell data analysis☆172Updated 2 years ago
- Conversion between scRNA-seq objects☆180Updated last month
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆138Updated last week
- Cell type prioritization in single-cell data☆124Updated 9 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆202Updated this week
- AUCell: score single cells with gene regulatory networks☆162Updated last year
- BANKSY: spatial clustering☆118Updated 2 weeks ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆150Updated 6 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆212Updated last year
- Spatial transcriptomics of heart tissue☆90Updated last year
- A Shiny web app for mapping datasets using Seurat v4☆131Updated 9 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆117Updated 11 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆132Updated 5 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆75Updated 6 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆165Updated 4 months ago
- ☆43Updated last month
- Spatial omics analysis toolbox☆312Updated 2 weeks ago
- Assessing the purity of single cell population☆132Updated 3 years ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆88Updated 2 months ago
- R client for the OmniPath web service☆138Updated 3 weeks ago