carmonalab / STACAS
R package for semi-supervised single-cell data integration
☆75Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for STACAS
- marker-based purification of cell types from single-cell RNA-seq datasets☆92Updated 5 months ago
- R package for pathway analysis in scRNA-seq data☆62Updated 3 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆68Updated 2 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆59Updated last year
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆61Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆96Updated 2 months ago
- Single Cell Cluster Evaluation☆87Updated 3 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆66Updated last year
- ☆58Updated 5 years ago
- Methods to discover gene programs on single-cell data☆84Updated this week
- Gene regulatory network containing signed transcription factor-target gene interactions☆63Updated 6 months ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆47Updated 6 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆77Updated last year
- ☆47Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆50Updated last month
- ☆46Updated last month
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 4 months ago
- Pan-Cancer Single Cell Classifier☆61Updated 5 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆87Updated 11 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆59Updated 4 months ago
- R package for Pathway RespOnsive GENe activity inference☆93Updated last year
- Significance analysis for clustering single-cell RNA-sequencing data☆100Updated 2 months ago
- A tool for removing doublets from single-cell RNA-seq data☆69Updated 3 years ago
- ☆39Updated 3 years ago
- Cell type pipes for R☆51Updated 9 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆100Updated last year
- Capybara: A computational tool to measure cell identity and fate transitions☆57Updated 2 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆66Updated this week
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆93Updated 5 months ago
- reticulate-free single cell format conversion☆86Updated last week