carmonalab / STACASLinks
R package for semi-supervised single-cell data integration
☆88Updated last month
Alternatives and similar repositories for STACAS
Users that are interested in STACAS are comparing it to the libraries listed below
Sorting:
- Single Cell Cluster Evaluation☆97Updated 4 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 3 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆121Updated last month
- R package for pathway analysis in scRNA-seq data☆75Updated last year
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- ☆41Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆88Updated 2 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆108Updated 2 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 4 months ago
- ☆62Updated 6 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆109Updated 4 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆72Updated last year
- R package to visualize gene expression data based on weighted kernel density estimation☆103Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆118Updated last year
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆64Updated 10 months ago
- R Package for Single-Cell Dataset Processing and Visualization☆64Updated 4 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 4 months ago
- ☆71Updated 2 years ago
- Metacell - Single-cell mRNA Analysis☆116Updated 7 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆68Updated 4 years ago
- AUCell: score single cells with gene regulatory networks☆166Updated last year
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆31Updated 4 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆73Updated last month
- Various utility functions for Seurat single-cell analysis☆53Updated 3 weeks ago
- Methods for decontamination of single cell data☆47Updated 6 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆111Updated 2 weeks ago
- Pan-Cancer Single Cell Classifier☆78Updated last year