Alternatives and similar repositories for muscat

Users that are interested in muscat are comparing it to the libraries listed below

• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆199Updated last week
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆198Updated last month
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆198Updated last year
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆212Updated 3 months ago
• rcastelo / GSVA
  Gene set variation analysis
  ☆230Updated this week
• SGDDNB / ShinyCell
  Shiny Interactive Web Apps for Single-Cell Data
  ☆200Updated 7 months ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆184Updated 2 months ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆224Updated last year
• carmonalab / ProjecTILs
  Interpretation of cell states using reference single-cell maps
  ☆300Updated 3 months ago
• huayc09 / SeuratExtend
  ☆193Updated 3 weeks ago
• satijalab / seurat-data
  Dataset distribution for Seurat
  ☆148Updated 8 months ago
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆122Updated 2 years ago
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆242Updated last week
• dtm2451 / dittoSeq
  Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
  ☆206Updated last month
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆171Updated last month
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆139Updated last year
• kharchenkolab / pagoda2
  R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
  ☆239Updated 3 months ago
• velocyto-team / velocyto.R
  RNA velocity estimation in R
  ☆191Updated 2 years ago
• neurorestore / Libra
  ☆178Updated 6 months ago
• mojaveazure / seurat-disk
  Interfaces for HDF5-based Single Cell File Formats
  ☆168Updated 2 years ago
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆183Updated 2 years ago
• RGLab / MAST
  Tools and methods for analysis of single cell assay data in R
  ☆258Updated last month
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆174Updated last year
• saezlab / decoupleR
  R package to infer biological activities from omics data using a collection of methods.
  ☆275Updated this week
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆234Updated 2 years ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆218Updated last month
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆193Updated last week
• satijalab / sctransform
  R package for modeling single cell UMI expression data using regularized negative binomial regression
  ☆242Updated 7 months ago
• kstreet13 / slingshot
  Functions for identifying and characterizing continuous developmental trajectories in single-cell data.
  ☆315Updated last year
• kharchenkolab / conos
  R package for the joint analysis of multiple single-cell RNA-seq datasets
  ☆217Updated last year