software to detect doublets
☆96Dec 28, 2024Updated last year
Alternatives and similar repositories for solo
Users that are interested in solo are comparing it to the libraries listed below
Sorting:
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆380Jul 30, 2025Updated 7 months ago
- Doublet detection in single-cell RNA-seq data.☆97Feb 6, 2025Updated last year
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆96Apr 11, 2025Updated 10 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆525Mar 21, 2025Updated 11 months ago
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 6 years ago
- chromatin Variability Across Regions (of the genome!)☆185Jul 10, 2024Updated last year
- Methods for detecting doublets in single-cell sequencing data☆231Feb 12, 2026Updated 2 weeks ago
- Detect doublets in single-cell RNA-seq data☆163Dec 29, 2020Updated 5 years ago
- ☆360Dec 9, 2021Updated 4 years ago
- A Bayesian model for compositional single-cell data analysis☆188Jan 13, 2026Updated last month
- A package to help convert different single-cell data formats to each other☆458Feb 20, 2026Updated last week
- A study to compare methods for clustering of scRNA-seq data☆46Jul 19, 2024Updated last year
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Jan 15, 2023Updated 3 years ago
- CellRank: dynamics from multi-view single-cell data☆430Updated this week
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Dec 1, 2025Updated 3 months ago
- ☆63Sep 13, 2024Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆75Dec 2, 2020Updated 5 years ago
- Cloud-based scalable and efficient single-cell genomics workflows☆68Feb 21, 2026Updated last week
- ☆38Feb 9, 2026Updated 3 weeks ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆77Jan 23, 2026Updated last month
- Single Cell Consensus Clustering with Speed☆20Dec 12, 2022Updated 3 years ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆245Feb 23, 2026Updated last week
- R package implementation of Milo for testing for differential abundance in KNN graphs☆421Sep 4, 2025Updated 5 months ago
- Batch balanced KNN☆178Oct 11, 2023Updated 2 years ago
- Clustering scRNAseq by genotypes☆195Nov 11, 2025Updated 3 months ago
- RNA Velocity generalized through dynamical modeling☆488Updated this week
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated 7 months ago
- Multi-resolution Variational Inference☆22Feb 23, 2026Updated last week
- Trajectory Inference Based on SNP information.☆24Jun 19, 2024Updated last year
- Differential expression analysis for single-cell RNA-seq data.☆206Oct 21, 2025Updated 4 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆58May 30, 2022Updated 3 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58May 5, 2021Updated 4 years ago
- A tool for semi-automatic cell type classification☆453Updated this week
- Models and datasets for perturbational single-cell omics☆172Aug 19, 2022Updated 3 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆66Feb 11, 2026Updated 2 weeks ago
- Convert between AnnData and SingleCellExperiment☆144Feb 24, 2026Updated last week
- Reference mapping for single-cell genomics☆399Dec 2, 2025Updated 3 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆81Feb 17, 2025Updated last year