Alternatives and similar repositories for solo:

Users that are interested in solo are comparing it to the libraries listed below

• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆83Updated 7 months ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆95Updated this week
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆97Updated last year
• theislab / anndata2ri
  Convert between AnnData and SingleCellExperiment
  ☆130Updated this week
• AllonMKlein / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆85Updated 5 years ago
• phbradley / conga
  Clonotype Neighbor Graph Analysis
  ☆83Updated 4 months ago
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆52Updated 5 months ago
• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆61Updated last year
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆100Updated 7 months ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆98Updated 2 years ago
• colomemaria / epiScanpy
  Episcanpy: Epigenomics Single Cell Analysis in Python
  ☆141Updated last month
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆155Updated last year
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆157Updated last month
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆101Updated last year
• interactivereport / cellxgene_VIP
  Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…
  ☆138Updated 7 months ago
• AllonKleinLab / scrublet
  Detect doublets in single-cell RNA-seq data
  ☆35Updated 5 years ago
• vib-singlecell-nf / vsn-pipelines
  A repository of pipelines for single-cell data in Nextflow DSL2
  ☆75Updated last year
• rpolicastro / scProportionTest
  ☆60Updated last year
• tanaylab / metacells
  Metacells - Single-cell RNA Sequencing Analysis
  ☆101Updated 4 months ago
• GreenleafLab / 10x-scATAC-2019
  Publication Page for Satpathy*, Granja* et al 2019
  ☆92Updated 4 years ago
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆100Updated 4 months ago
• GreenleafLab / MPAL-Single-Cell-2019
  Publication Page for MPAL Paper 2019
  ☆77Updated 4 years ago
• timoast / sinto
  Tools for single-cell data processing
  ☆122Updated 8 months ago
• YosefLab / popV
  ☆67Updated this week
• GregorySchwartz / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆105Updated 3 months ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆108Updated 4 months ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆59Updated 7 months ago
• cellgeni / batchbench
  ☆47Updated 2 years ago
• AllonKleinLab / SPRING_dev
  ☆67Updated 9 months ago
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆79Updated 6 months ago