software to detect doublets
☆98Dec 28, 2024Updated last year
Alternatives and similar repositories for solo
Users that are interested in solo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆418Updated this week
- Doublet detection in single-cell RNA-seq data.☆99Feb 6, 2025Updated last year
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆104Apr 11, 2025Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆75Dec 2, 2020Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Methods for detecting doublets in single-cell sequencing data☆263Jul 7, 2026Updated last month
- Detect doublets in single-cell RNA-seq data☆85Jul 3, 2019Updated 7 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆560Mar 21, 2025Updated last year
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 6 months ago
- Detect doublets in single-cell RNA-seq data☆179Dec 29, 2020Updated 5 years ago
- chromatin Variability Across Regions (of the genome!)☆193May 1, 2026Updated 4 months ago
- Trajectory Inference Based on SNP information.☆24Jun 19, 2024Updated 2 years ago
- CellRank: dynamics from multi-view single-cell data☆456Updated this week
- ☆363Dec 9, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Cloud-based scalable and efficient single-cell genomics workflows☆68Aug 6, 2026Updated 3 weeks ago
- A Bayesian model for compositional single-cell data analysis☆200Jan 13, 2026Updated 7 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆446Aug 25, 2026Updated last week
- ☆68Sep 13, 2024Updated last year
- Multi-resolution Variational Inference☆24Aug 17, 2026Updated 2 weeks ago
- In-silico doublet annotation for single cell RNA sequencing data☆11Jan 7, 2026Updated 7 months ago
- ☆39Apr 21, 2026Updated 4 months ago
- Convert between AnnData and SingleCellExperiment☆152Updated this week
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆59May 5, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A scanpy extension to analyse single-cell TCR and BCR data.☆265Updated this week
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆77Jun 10, 2026Updated 2 months ago
- Batch balanced KNN☆179Oct 11, 2023Updated 2 years ago
- RNA Velocity generalized through dynamical modeling☆508Feb 25, 2026Updated 6 months ago
- Panoramic stitching of single cell data☆294Jul 14, 2025Updated last year
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆22Jan 15, 2023Updated 3 years ago
- Single Cell Consensus Clustering with Speed☆22Dec 12, 2022Updated 3 years ago
- Differential expression analysis for single-cell RNA-seq data.☆205Oct 21, 2025Updated 10 months ago
- Clustering scRNAseq by genotypes☆212Apr 30, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A Shiny web app for mapping datasets using Seurat v4☆150May 22, 2026Updated 3 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆346Apr 23, 2024Updated 2 years ago
- Instructions and analysis scripts for single cell Higher Order Testing (scHOT)☆10Oct 7, 2020Updated 5 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆85Feb 17, 2025Updated last year
- Benchmarking analysis of data integration tools☆430Apr 27, 2026Updated 4 months ago
- A tool for semi-automatic cell type classification☆502May 22, 2026Updated 3 months ago
- A study to compare methods for clustering of scRNA-seq data☆47Jul 19, 2024Updated 2 years ago