theislab / scCODALinks
A Bayesian model for compositional single-cell data analysis
☆178Updated 2 years ago
Alternatives and similar repositories for scCODA
Users that are interested in scCODA are comparing it to the libraries listed below
Sorting:
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆168Updated 7 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆119Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆166Updated 2 months ago
- AUCell: score single cells with gene regulatory networks☆171Updated last year
- Conversion between scRNA-seq objects☆188Updated last week
- Cell type prioritization in single-cell data☆125Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆221Updated last year
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆117Updated this week
- Multiome GRN inference.☆130Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆111Updated 2 years ago
- scDIOR: Single cell data IO softwaRe☆148Updated 3 years ago
- Gene set scoring for single-cell data☆166Updated 3 weeks ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆135Updated 8 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆133Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆120Updated 5 months ago
- BANKSY: spatial clustering☆124Updated 2 weeks ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆79Updated 9 months ago
- Methods to discover gene programs on single-cell data☆155Updated last month
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆168Updated last year
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆146Updated 2 months ago
- ☆125Updated 3 years ago
- Single Cell Cluster Evaluation☆97Updated 4 years ago
- Methods for detecting doublets in single-cell sequencing data☆212Updated last week
- reticulate-free single cell format conversion☆191Updated last month
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Updated 2 years ago
- Clustering scRNAseq by genotypes☆189Updated 11 months ago
- ☆177Updated 5 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆210Updated 2 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year