theislab / scCODALinks
A Bayesian model for compositional single-cell data analysis
☆186Updated last week
Alternatives and similar repositories for scCODA
Users that are interested in scCODA are comparing it to the libraries listed below
Sorting:
- Significance analysis for clustering single-cell RNA-sequencing data☆123Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆175Updated 9 months ago
- Multiome GRN inference.☆131Updated last year
- Conversion between scRNA-seq objects☆197Updated last week
- AUCell: score single cells with gene regulatory networks☆182Updated last year
- Cell type prioritization in single-cell data☆136Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆179Updated 5 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆227Updated last year
- scDIOR: Single cell data IO softwaRe☆153Updated 3 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆137Updated 11 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆113Updated 2 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆152Updated 5 months ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆119Updated 2 months ago
- Analysis of cell-cell communication at single-cell resolution☆106Updated last year
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆169Updated last year
- Gene set scoring for single-cell data☆177Updated 2 months ago
- BANKSY: spatial clustering☆133Updated 3 months ago
- reticulate-free single cell format conversion☆202Updated last week
- Methods for detecting doublets in single-cell sequencing data☆227Updated last month
- A Shiny web app for mapping datasets using Seurat v4☆143Updated last year
- Fast Wilcoxon and auROC☆203Updated last year
- Convert between AnnData and SingleCellExperiment☆143Updated last week
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆80Updated 11 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆116Updated last year
- Methods to discover gene programs on single-cell data☆170Updated 3 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆141Updated 2 years ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆169Updated 3 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Updated 2 years ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆179Updated last week
- Detect doublets in single-cell RNA-seq data☆161Updated 5 years ago