Alternatives and similar repositories for cdr3-QTL:

Users that are interested in cdr3-QTL are comparing it to the libraries listed below

• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆31Updated last year
• nullranges / nullranges
  Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…
  ☆27Updated last year
• OscarGVelasco / LotOfCells
  R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data
  ☆21Updated 7 months ago
• Sarah145 / CCPlotR
  An R package for visualising cell-cell interactions
  ☆43Updated 6 months ago
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆36Updated this week
• cziegenhain / UMIcountR
  ☆16Updated 2 years ago
• jacobhepkema / scover
  scover
  ☆23Updated last year
• kstreet13 / scry
  Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).
  ☆19Updated 8 months ago
• greenelab / miQC
  Flexible, probablistic metrics for quality control of scRNA-seq data
  ☆19Updated 2 years ago
• Papatheodorou-Group / CATD_snakemake
  Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…
  ☆15Updated 7 months ago
• pachterlab / kite
  kallisto index tag extractor
  ☆20Updated 5 years ago
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆31Updated 3 years ago
• bernatgel / regioneR
  An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests
  ☆13Updated last year
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆17Updated 2 years ago
• chanwkimlab / MarcoPolo
  MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…
  ☆20Updated 3 months ago
• BUStools / BUS_notebooks_R
  R vignettes for processing BUS format single-cell RNA-seq files
  ☆20Updated 5 years ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆25Updated last year
• phipsonlab / speckle
  R package for analysing single cell data
  ☆52Updated 2 years ago
• MarioniLab / geneBasisR
  R package for gene selection using k-NN graphs.
  ☆13Updated last year
• rnabioco / scraps
  Single-cell RNA Processing Software
  ☆11Updated 4 months ago
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆17Updated 3 weeks ago
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆17Updated 3 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆21Updated 11 months ago
• immunogenomics / singlecellmethods
  Collection of useful methods for single cell analysis
  ☆14Updated 6 months ago
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 2 years ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 3 years ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆20Updated last month
• GregorySchwartz / tooManyCellsR
  An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.
  ☆25Updated 5 years ago
• alexisvdb / rnaseq_coexpression
  Code for RNA-seq gene coexpression analysis
  ☆9Updated 3 years ago
• Sun-lab / scRNAseq_pipelines
  pipelines to process scRNA-seq data
  ☆11Updated 4 years ago