immunogenomics / cdr3-QTLLinks
Trans-association between HLA and TCR-CDR3
☆17Updated 2 years ago
Alternatives and similar repositories for cdr3-QTL
Users that are interested in cdr3-QTL are comparing it to the libraries listed below
Sorting:
- An R package for visualising cell-cell interactions☆44Updated 9 months ago
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated 10 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 2 weeks ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆36Updated last month
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆27Updated 2 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 2 months ago
- ☆12Updated last year
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆20Updated 10 months ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated last month
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆20Updated 2 years ago
- Inferring gene co-expression networks from single cell gene expression data☆24Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- R package for gene selection using k-NN graphs.☆13Updated last year
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated 2 weeks ago
- scover☆23Updated last year
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated last month
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- ☆16Updated 3 years ago
- ☆14Updated 6 years ago
- Collection of useful methods for single cell analysis☆14Updated 9 months ago
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 2 years ago
- Pairwise Hierarchical Model☆18Updated 3 years ago
- Single-cell analysis with non-negative matrix factorization☆44Updated 7 months ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago