Clonotype Neighbor Graph Analysis
☆95Feb 12, 2026Updated last month
Alternatives and similar repositories for conga
Users that are interested in conga are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆122Sep 16, 2025Updated 6 months ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆95Dec 4, 2020Updated 5 years ago
- flexible CDR based distance metrics☆71Dec 16, 2025Updated 3 months ago
- Using TCR and expression for sequence embedding☆63Jan 6, 2026Updated 3 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Jan 15, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- 🗂️ Git-based TCR database storage & management. Submissions welcome!☆153Mar 27, 2026Updated 2 weeks ago
- Mapping the Functional Landscape of TCR Repertoire☆36Oct 8, 2021Updated 4 years ago
- A toolkit for single-cell immune profiling☆366Apr 3, 2026Updated last week
- ☆41Aug 18, 2020Updated 5 years ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆17May 22, 2023Updated 2 years ago
- ☆14Oct 16, 2025Updated 5 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆125Mar 16, 2026Updated 3 weeks ago
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆55Apr 3, 2024Updated 2 years ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆238Feb 12, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 4 years ago
- T/B cell receptor sequencing analysis notes☆275Dec 1, 2024Updated last year
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆24Mar 6, 2026Updated last month
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆28Oct 1, 2022Updated 3 years ago
- Summary statistics for repertoires☆17Feb 1, 2023Updated 3 years ago
- [Deprectated, use vdjmatch2 instead] ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Feb 23, 2026Updated last month
- COMET Single-Cell Marker Detection tool☆33Jun 21, 2022Updated 3 years ago
- TCR and BCR assembly from RNA-seq data☆346Mar 14, 2026Updated 3 weeks ago
- LIANA: a LIgand-receptor ANalysis frAmework☆238Aug 7, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Feb 8, 2023Updated 3 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆64Mar 12, 2026Updated 3 weeks ago
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆385Apr 3, 2026Updated last week
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆65Nov 18, 2025Updated 4 months ago
- 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design☆338Nov 18, 2025Updated 4 months ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆136Nov 28, 2023Updated 2 years ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆246Updated this week
- ☆31Jun 24, 2025Updated 9 months ago
- Normalize CITEseq Data☆70Nov 9, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Apr 17, 2024Updated last year
- Interpretation of cell states using reference single-cell maps☆315Dec 19, 2025Updated 3 months ago
- ☆17Jun 24, 2021Updated 4 years ago
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆98Apr 11, 2025Updated last year
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆21Apr 14, 2025Updated 11 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆91Apr 12, 2024Updated last year
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆30Jul 12, 2025Updated 8 months ago