phbradley / congaLinks
Clonotype Neighbor Graph Analysis
☆90Updated 3 weeks ago
Alternatives and similar repositories for conga
Users that are interested in conga are comparing it to the libraries listed below
Sorting:
- R package to access DoRothEA's regulons☆150Updated last year
- software to detect doublets☆94Updated 8 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆118Updated this week
- Tools for single-cell data processing☆126Updated last year
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆76Updated 7 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆116Updated 4 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆92Updated last week
- Using TCR and expression for sequence embedding☆58Updated 3 weeks ago
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- SingleCellNet: classify single cells across species and platforms☆138Updated 2 years ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆157Updated last week
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 4 months ago
- AUCell: score single cells with gene regulatory networks☆166Updated last year
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆24Updated 2 years ago
- ☆80Updated this week
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆141Updated last year
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆130Updated last year
- Methods to compute Local Inverse Simpson's Index (LISI)☆68Updated 4 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆108Updated 2 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆167Updated last year
- Multi-omic velocity inference☆110Updated 10 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆74Updated last month
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 3 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆167Updated 5 months ago
- A docker image for single-cell analysis☆89Updated 7 months ago
- Ultrafast TCR clustering algorithm based on geometric isometry☆68Updated 10 months ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆147Updated 9 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated last week