coskunlab / scSpaMetLinks
☆12Updated 2 years ago
Alternatives and similar repositories for scSpaMet
Users that are interested in scSpaMet are comparing it to the libraries listed below
Sorting:
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 10 months ago
- ☆13Updated last year
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆17Updated last month
- R package for generalized binary covariance decomposition.☆14Updated 6 months ago
- Code for spatial subclone paper☆16Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Updated last year
- Computational pipeline to process EasySci-RNA data.☆22Updated 2 years ago
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆17Updated last year
- ☆17Updated last year
- single cell analysis of treatment naive and treated human PDAC☆25Updated 3 years ago
- Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data☆17Updated 9 months ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Updated 2 years ago
- Trends in single cell papers☆16Updated last year
- ☆12Updated last year
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆15Updated 6 months ago
- ☆12Updated 2 years ago
- ☆13Updated 2 years ago
- ☆22Updated 6 months ago
- ☆21Updated last year
- Scripts from the GBM cellular states paper☆20Updated 4 years ago
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆35Updated 9 months ago
- UHCA☆11Updated last year
- ☆21Updated 6 months ago
- ☆11Updated last year
- ☆26Updated 2 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Updated 7 months ago
- ☆15Updated 2 years ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Updated 2 years ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Updated last year
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆25Updated 4 months ago