Teichlab / cellhint
A tool for semi-automatic cell type harmonization and integration
☆94Updated 10 months ago
Related projects ⓘ
Alternatives and complementary repositories for cellhint
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆91Updated 11 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆115Updated 6 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆66Updated this week
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆96Updated last month
- Analysis of cell-cell communication at single-cell resolution☆96Updated 2 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆59Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆75Updated 5 months ago
- ☆108Updated 2 years ago
- Spatial transcriptomics of heart tissue☆72Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆123Updated this week
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆47Updated 6 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 3 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆77Updated last year
- Single-cell disease relevance score (scDRS)☆113Updated last month
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆72Updated 4 years ago
- ☆27Updated 2 years ago
- ☆100Updated 9 months ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆96Updated 2 weeks ago
- ☆93Updated 4 years ago
- Single-nuclei RNA-seq and ATAC-seq in Alzheimer's disease☆85Updated 3 years ago
- R implementation of GeneTrajectory☆49Updated 7 months ago
- ☆46Updated last month
- Single-cell Lung Cancer Atlas with 1.2M cells☆59Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆58Updated last week
- Construct Tumor Transition Zone Microenvironment☆35Updated this week
- Methods to discover gene programs on single-cell data☆84Updated this week
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆40Updated 3 years ago
- BANKSY: spatial clustering☆75Updated 3 months ago
- The integration of single cell rank-based gene set enrichment analysis☆112Updated 3 months ago
- Predict RNA velocity through deep learning☆64Updated 11 months ago