Teichlab / cellhintLinks
A tool for semi-automatic cell type harmonization and integration
☆108Updated 3 months ago
Alternatives and similar repositories for cellhint
Users that are interested in cellhint are comparing it to the libraries listed below
Sorting:
- ☆122Updated 3 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆107Updated 2 months ago
- ☆79Updated last week
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆117Updated 10 months ago
- Analysis of cell-cell communication at single-cell resolution☆101Updated 10 months ago
- R implementation of GeneTrajectory☆59Updated last year
- Predict RNA velocity through deep learning☆70Updated last year
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆131Updated 4 months ago
- ☆53Updated 9 months ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆60Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆110Updated 2 months ago
- Single-cell Lung Cancer Atlas with 1.2M cells☆64Updated 5 months ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆50Updated 3 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆76Updated this week
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆155Updated 3 months ago
- Spatial transcriptomics of heart tissue☆88Updated last year
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆74Updated 2 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆82Updated last year
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆124Updated last year
- Gene group activity utility functions for Scanpy☆79Updated 6 months ago
- ☆30Updated 2 years ago
- ☆24Updated 3 months ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆109Updated 5 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆74Updated 5 months ago
- Senescent Cell Identification☆42Updated last year
- This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Pro…☆83Updated 9 months ago
- Codes for the scPLC project☆67Updated 2 years ago
- ☆116Updated 2 months ago
- trajectory inference☆104Updated 5 months ago
- ☆68Updated last year