A tool for semi-automatic cell type harmonization and integration
☆120Mar 9, 2026Updated 3 months ago
Alternatives and similar repositories for cellhint
Users that are interested in cellhint are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for semi-automatic cell type classification☆487May 22, 2026Updated 2 weeks ago
- Materials and scripts for building cell type encyclopedia table☆20Mar 16, 2026Updated 2 months ago
- Gene group activity utility functions for Scanpy☆107Dec 21, 2024Updated last year
- ☆58Feb 23, 2024Updated 2 years ago
- ☆131Mar 27, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆254May 14, 2026Updated 3 weeks ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆145Feb 20, 2025Updated last year
- Join subcellular Visium HD bins into cells☆143May 8, 2026Updated last month
- ☆33May 4, 2025Updated last year
- ☆11May 24, 2024Updated 2 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆122Jan 22, 2024Updated 2 years ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆177May 25, 2026Updated 2 weeks ago
- These are scripts for pan-cacner NK cells analyses.☆77Aug 18, 2023Updated 2 years ago
- Scissor package☆267May 10, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- CellRank: dynamics from multi-view single-cell data☆451Updated this week
- Single-Cell Inference of Class Switch Recombination☆23Feb 11, 2026Updated 4 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆88Aug 10, 2025Updated 10 months ago
- A deep learning architecture for robust inference and accurate prediction of cellular dynamics☆82Jul 20, 2025Updated 10 months ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆440Apr 11, 2026Updated 2 months ago
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆188Aug 12, 2025Updated 9 months ago
- Methods to discover gene programs on single-cell data☆191Updated this week
- Python package to perform enrichment analysis from omics data.☆269Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- LIANA: a LIgand-receptor ANalysis frAmework☆242Aug 7, 2024Updated last year
- Reference mapping for single-cell genomics☆405Mar 21, 2026Updated 2 months ago
- Assessing the purity of single cell population☆150Jun 3, 2022Updated 4 years ago
- ☆33Feb 26, 2025Updated last year
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆248Mar 14, 2026Updated 2 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆122Apr 26, 2025Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆87Mar 19, 2026Updated 2 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆125Apr 20, 2026Updated last month
- Pan-Cancer Single Cell Classifier☆87May 30, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆17Mar 27, 2023Updated 3 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆127Updated this week
- ☆152Mar 20, 2026Updated 2 months ago
- ☆34Feb 25, 2025Updated last year
- ☆138Apr 24, 2024Updated 2 years ago
- Non-parametric density inference for single-cell analysis.☆74Apr 10, 2026Updated 2 months ago
- Conversion between scRNA-seq objects☆210May 5, 2026Updated last month