const-ae / pyLemurLinks
A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
☆25Updated 4 months ago
Alternatives and similar repositories for pyLemur
Users that are interested in pyLemur are comparing it to the libraries listed below
Sorting:
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆54Updated this week
- ☆38Updated 8 months ago
- ☆23Updated 2 months ago
- Multi-resolution Variational Inference☆22Updated 2 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated last month
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆51Updated this week
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 9 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated 2 weeks ago
- CAST package☆38Updated 7 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 3 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆21Updated 2 weeks ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- A python package for chromVAR☆28Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Identification of spatial homogeneous regions☆21Updated 4 months ago
- Information-based dimensionality reduction☆29Updated 5 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated 11 months ago
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆23Updated this week
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 4 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated 11 months ago
- .h5mu files interface for Seurat☆29Updated last year
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 6 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 2 months ago
- ☆26Updated last year
- scVI extension for unspliced RNA☆16Updated 2 weeks ago
- Single cell omics biology annotations☆51Updated last month
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- ☆29Updated 2 years ago
- ☆43Updated 7 months ago
- ☆44Updated this week