const-ae / pyLemur
A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
☆12Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for pyLemur
- Genomic Features in Python from BioConductor's AnnotationHub☆19Updated this week
- AnnData interoperability in R☆58Updated this week
- A toolking for cell type hierarchies: marker selection & consistent classification☆20Updated 11 months ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆11Updated 10 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆36Updated 2 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆49Updated last week
- A repository for benchmarking spatial deconvolution and mapping tools☆27Updated 3 weeks ago
- ☆22Updated last month
- A python package for chromVAR☆27Updated last year
- Test genes for Spatial Variation☆12Updated last year
- Dorothea package in Python☆11Updated 2 years ago
- CAST package☆23Updated 2 weeks ago
- Multi-resolution Variational Inference☆22Updated last month
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆19Updated this week
- ☆20Updated 2 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆32Updated last month
- .h5mu files interface for Seurat☆26Updated 11 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated 2 weeks ago
- Multi-study integration of cellular trajectories☆18Updated 4 years ago
- Dynamical systems methods for RNA velocity analysis☆23Updated 3 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆21Updated this week
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆23Updated 5 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆18Updated 3 weeks ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 6 months ago
- ☆38Updated last week
- ☆12Updated 2 years ago
- ☆12Updated 5 months ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆25Updated 3 years ago
- scVI extension for unspliced RNA☆16Updated last week
- Aligning gene expression trajectories of single-cell reference and query systems☆44Updated 3 weeks ago