const-ae / pyLemurLinks
A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
☆26Updated 9 months ago
Alternatives and similar repositories for pyLemur
Users that are interested in pyLemur are comparing it to the libraries listed below
Sorting:
- ☆30Updated 6 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆29Updated 3 weeks ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆61Updated last month
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Updated 3 years ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆35Updated this week
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆65Updated last month
- A modular tool for proportion analysis in single-cell sequencing data☆23Updated 2 weeks ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆54Updated last year
- CAST package☆40Updated 11 months ago
- Multi-resolution Variational Inference☆22Updated last week
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- A python package for chromVAR☆30Updated 2 years ago
- ☆41Updated last month
- .h5mu files interface for Seurat☆31Updated last year
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated 3 weeks ago
- Single cell omics biology annotations☆51Updated 5 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆34Updated 4 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated last month
- Cell-type Relationship Analysis Workflow Done Across Distances☆38Updated 3 months ago
- Information-based dimensionality reduction☆29Updated 9 months ago
- Non-parametric density inference for single-cell analysis.☆72Updated 4 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆64Updated 2 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆49Updated 8 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 6 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- ☆13Updated last month