Python playground for cell-type-specific biology
☆14Aug 25, 2026Updated 2 months ago
Alternatives and similar repositories for gcell
Users that are interested in gcell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆114Apr 7, 2026Updated 6 months ago
- Toolkit for metacell analysis☆24Aug 8, 2024Updated 2 years ago
- Learning meaningful representations of genes☆22Jul 7, 2025Updated last year
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated 2 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Jun 10, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆28Apr 9, 2025Updated last year
- Manage & Modify {ggplot2} Figures Using {ggfigdone}☆33Dec 26, 2024Updated last year
- ☆14Jun 10, 2025Updated last year
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated 2 years ago
- A tissue-specific single-cell biological age model☆14Jul 26, 2023Updated 3 years ago
- codes for article☆18Jan 14, 2026Updated 9 months ago
- Detect hierarchical structures in cell-cell communications☆18Jan 26, 2025Updated last year
- Kinship In Mixed Model Analysis of RNA-seq☆16Sep 2, 2026Updated last month
- ☆17Sep 29, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆16May 24, 2025Updated last year
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆18Oct 5, 2024Updated 2 years ago
- Non-parametric density inference for single-cell analysis.☆77Sep 24, 2026Updated last month
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆93Mar 19, 2026Updated 7 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆76Dec 1, 2025Updated 10 months ago
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆19Sep 25, 2026Updated last month
- ☆18May 14, 2025Updated last year
- Fast motif matching in R☆50Jan 24, 2024Updated 2 years ago
- ☆49Oct 29, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆20Sep 19, 2025Updated last year
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Exploring how tokenization shapes the performance and generalization of single-cell foundation models.☆21Oct 13, 2026Updated 2 weeks ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆56Oct 31, 2024Updated last year
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆93Apr 15, 2026Updated 6 months ago
- ☆19Nov 24, 2024Updated last year
- Single-Cell Inference of Class Switch Recombination☆25Jun 19, 2026Updated 4 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆28Feb 26, 2026Updated 8 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆47Feb 19, 2026Updated 8 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆27Jul 9, 2025Updated last year
- Openvibe fork☆10Aug 2, 2013Updated 13 years ago
- My extensions for Seurat package☆10Jun 26, 2020Updated 6 years ago
- a deep generative model for single-cell survival analysis☆26Dec 2, 2025Updated 10 months ago
- scTM: A package for topic modelling in transcriptomics data☆28May 1, 2024Updated 2 years ago
- Annotatability, a method to identify meaningful patterns in single-cell genomics data through annotation-trainability analysis, which est…☆19Jun 23, 2025Updated last year
- machine learning applications for dadi☆16Jan 23, 2025Updated last year