GET-Foundation / gcellLinks
Python playground for cell-type-specific biology
☆12Updated last week
Alternatives and similar repositories for gcell
Users that are interested in gcell are comparing it to the libraries listed below
Sorting:
- cell type specific, trait-associated gene regulation☆29Updated 8 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 9 months ago
- iterative clustering pipeline of big single cell datasets.☆35Updated 3 months ago
- Vaeda method for computational doublet annotation☆18Updated last year
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated last month
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Updated 8 months ago
- Trends in single cell papers☆16Updated last year
- ☆23Updated 2 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆33Updated 2 weeks ago
- ☆35Updated 9 months ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated last year
- Hotspot cluster distance analysis in spatial transcriptomic data☆33Updated 10 months ago
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Updated last year
- Information-based dimensionality reduction☆29Updated last year
- ☆13Updated 3 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated last year
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆24Updated 7 months ago
- ☆17Updated last year
- A modular tool for proportion analysis in single-cell sequencing data☆24Updated 3 months ago
- ☆26Updated 7 months ago
- ☆20Updated 2 years ago
- Methods for visualization and analysis of spatially-resolved gene expression☆21Updated 4 months ago
- Difference in Intercellular Communication from scRNA-seq data☆22Updated 2 months ago
- ☆15Updated 2 years ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Updated last year
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆16Updated 2 years ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆53Updated last year
- scVI extension for unspliced RNA☆16Updated 7 months ago
- ☆16Updated 2 years ago
- ☆44Updated last month