Python playground for cell-type-specific biology
☆14Aug 25, 2026Updated this week
Alternatives and similar repositories for gcell
Users that are interested in gcell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Toolkit for metacell analysis☆24Aug 8, 2024Updated 2 years ago
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆113Apr 7, 2026Updated 4 months ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Jun 10, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆28Apr 9, 2025Updated last year
- Manage & Modify {ggplot2} Figures Using {ggfigdone}☆33Dec 26, 2024Updated last year
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- A tissue-specific single-cell biological age model☆14Jul 26, 2023Updated 3 years ago
- Detect hierarchical structures in cell-cell communications☆16Jan 26, 2025Updated last year
- codes for article☆19Jan 14, 2026Updated 7 months ago
- ☆14Jun 10, 2025Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆91Mar 19, 2026Updated 5 months ago
- Kinship In Mixed Model Analysis of RNA-seq☆16Apr 14, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- ☆16Sep 29, 2023Updated 2 years ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆18Oct 5, 2024Updated last year
- Non-parametric density inference for single-cell analysis.☆75Jul 28, 2026Updated last month
- ☆15May 24, 2025Updated last year
- Single-Cell Inference of Class Switch Recombination☆25Jun 19, 2026Updated 2 months ago
- Fast motif matching in R☆49Jan 24, 2024Updated 2 years ago
- ☆18May 14, 2025Updated last year
- ☆49Oct 29, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆76Dec 1, 2025Updated 8 months ago
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆16Aug 11, 2026Updated 2 weeks ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆55Oct 31, 2024Updated last year
- ☆20Sep 19, 2025Updated 11 months ago
- ☆18Nov 24, 2024Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆47Feb 19, 2026Updated 6 months ago
- Exploring how tokenization shapes the performance and generalization of single-cell foundation models.☆20Apr 16, 2026Updated 4 months ago
- scTM: A package for topic modelling in transcriptomics data☆27May 1, 2024Updated 2 years ago
- A modular tool for proportion analysis in single-cell sequencing data☆29Feb 26, 2026Updated 6 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆93Apr 15, 2026Updated 4 months ago
- machine learning applications for dadi☆17Jan 23, 2025Updated last year
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆75Dec 13, 2024Updated last year
- ☆26Jul 22, 2026Updated last month
- ☆61Feb 14, 2025Updated last year
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆30Sep 6, 2024Updated last year
- Annotatability, a method to identify meaningful patterns in single-cell genomics data through annotation-trainability analysis, which est…☆19Jun 23, 2025Updated last year