GET-Foundation / gcellLinks
Python playground for cell-type-specific biology
☆12Updated 2 weeks ago
Alternatives and similar repositories for gcell
Users that are interested in gcell are comparing it to the libraries listed below
Sorting:
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 11 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆28Updated 3 months ago
- ☆17Updated last year
- Information-based dimensionality reduction☆29Updated last year
- iterative clustering pipeline of big single cell datasets.☆36Updated 5 months ago
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Updated 10 months ago
- cell type specific, trait-associated gene regulation☆29Updated 10 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆24Updated 4 months ago
- ☆13Updated 5 months ago
- Hotspot cluster distance analysis in spatial transcriptomic data☆35Updated 11 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34Updated last month
- ☆15Updated 2 years ago
- Computational pipeline to process EasySci-RNA data.☆22Updated 2 years ago
- Trends in single cell papers☆16Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated 2 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆13Updated last year
- Toolbox of the Human Neural Organoid Cell Atlas☆29Updated last week
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Updated last year
- ☆36Updated 11 months ago
- Individual level Differential Expression Analysis for Single cells☆26Updated 3 years ago
- ☆24Updated 3 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆39Updated 2 years ago
- CAST package☆42Updated last year
- ☆23Updated 7 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Updated last year
- Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection☆16Updated 2 years ago
- ☆20Updated 2 years ago