Python playground for cell-type-specific biology
☆14Jul 10, 2026Updated last week
Alternatives and similar repositories for gcell
Users that are interested in gcell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Toolkit for metacell analysis☆24Aug 8, 2024Updated last year
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆109Apr 7, 2026Updated 3 months ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Jun 10, 2025Updated last year
- ☆28Apr 9, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Manage & Modify {ggplot2} Figures Using {ggfigdone}☆33Dec 26, 2024Updated last year
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- A tissue-specific single-cell biological age model☆14Jul 26, 2023Updated 2 years ago
- Detect hierarchical structures in cell-cell communications☆16Jan 26, 2025Updated last year
- codes for article☆19Jan 14, 2026Updated 6 months ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- ☆14Jun 10, 2025Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆88Mar 19, 2026Updated 4 months ago
- Kinship In Mixed Model Analysis of RNA-seq☆16Apr 14, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- ☆16Sep 29, 2023Updated 2 years ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆18Oct 5, 2024Updated last year
- Non-parametric density inference for single-cell analysis.☆75Jun 29, 2026Updated 3 weeks ago
- Single-Cell Inference of Class Switch Recombination☆24Jun 19, 2026Updated last month
- ☆15May 24, 2025Updated last year
- Fast motif matching in R☆48Jan 24, 2024Updated 2 years ago
- ☆18May 14, 2025Updated last year
- ☆49Oct 29, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆74Dec 1, 2025Updated 7 months ago
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆16Dec 5, 2025Updated 7 months ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆54Oct 31, 2024Updated last year