☆43Jun 11, 2022Updated 3 years ago
Alternatives and similar repositories for AutoClass
Users that are interested in AutoClass are comparing it to the libraries listed below
Sorting:
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 3 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 2 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- Non-parametric density inference for single-cell analysis.☆73May 22, 2025Updated 9 months ago
- ☆47Apr 18, 2020Updated 5 years ago
- Interactive software tool for the assignment of cell types in single-cell studies.☆33Apr 14, 2023Updated 2 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆11Aug 2, 2023Updated 2 years ago
- ☆24Nov 6, 2021Updated 4 years ago
- Predict RNA velocity through deep learning☆72Dec 12, 2023Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Aug 12, 2022Updated 3 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆45Apr 12, 2023Updated 2 years ago
- ☆10Mar 11, 2025Updated 11 months ago
- Integrated Genome Modeling (IGM): multi-modal data-driven simulator of genome structures☆12Jun 15, 2023Updated 2 years ago
- Accurate and fast cell marker gene identification with COSG☆54Feb 13, 2026Updated 2 weeks ago
- trajectory inference☆107Jan 27, 2025Updated last year
- Marker Selection by matching manifolds and elastic net☆23Oct 22, 2024Updated last year
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 2 years ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 3 years ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated last year
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- Imputing Single-cell RNA-seq data by combining Graph Convolution and Autoencoder Neural Networks☆20Jun 21, 2024Updated last year
- R package for transfer learning of single-cell RNA-seq denoising☆30Jun 14, 2022Updated 3 years ago
- A portable and fast single cell type identifier☆64May 12, 2021Updated 4 years ago
- Quasilinear data representations for single-cell omics data analysis☆43May 4, 2023Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 6 months ago
- R package for generalized binary covariance decomposition.☆14Jul 13, 2025Updated 7 months ago
- Single-Cell Sequencing Quality Control and Processing Software☆16Mar 26, 2022Updated 3 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated last year
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Feb 27, 2019Updated 7 years ago
- ☆15Sep 27, 2022Updated 3 years ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated 10 months ago
- ☆39Jan 26, 2026Updated last month
- This repository contains HCA Benchmarking codes☆26Nov 11, 2019Updated 6 years ago
- Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)☆24Jan 22, 2020Updated 6 years ago
- ☆17Apr 9, 2021Updated 4 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year