datapplab / AutoClassLinks
☆44Updated 3 years ago
Alternatives and similar repositories for AutoClass
Users that are interested in AutoClass are comparing it to the libraries listed below
Sorting:
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 5 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last year
- ☆43Updated last year
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 5 years ago
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆28Updated last year
- Single cell omics biology annotations☆51Updated 2 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Gene group activity utility functions for Scanpy☆78Updated 6 months ago
- Whole mouse brain snATAC seq analysis☆26Updated 2 months ago
- ☆45Updated last year
- cTPnet Package☆25Updated 2 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated last year
- ACTIONet single-cell analysis framework☆41Updated 9 months ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆42Updated 9 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 3 weeks ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆27Updated last year
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆29Updated 4 years ago
- inferring regulatory cellular dynamics☆46Updated last week
- ☆30Updated 2 years ago
- ☆27Updated last week
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆55Updated 5 months ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated 11 months ago
- ☆18Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- SPROD: Spatial expression profiling de-noising☆37Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- ☆11Updated 2 years ago
- A novel unsupervised batch removal framework, called iMAP, based on neural networks.☆35Updated 3 years ago