datapplab / AutoClass
☆42Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for AutoClass
- ☆40Updated 10 months ago
- PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.☆26Updated 10 months ago
- ☆40Updated 6 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 2 months ago
- Gene group activity utility functions for Scanpy☆56Updated 3 months ago
- ☆16Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆33Updated 3 years ago
- An unsupervised approach for the integrative analysis of single-cell multi-omics data☆28Updated 4 years ago
- ☆48Updated 4 months ago
- Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data☆26Updated 4 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆20Updated last year
- Single cell omics biology annotations☆48Updated 2 months ago
- SPROD: Spatial expression profiling de-noising☆33Updated last year
- Methods to compute Local Inverse Simpson's Index (LISI)☆58Updated 3 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 9 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 6 months ago
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆13Updated 3 weeks ago
- ☆79Updated last week
- Imputation method for scRNA-seq based on low-rank approximation☆73Updated 11 months ago
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆47Updated 3 years ago
- ☆21Updated 2 years ago
- ☆34Updated 6 months ago
- ☆25Updated 3 years ago
- ☆39Updated 3 years ago
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆28Updated 2 weeks ago
- A deep learning architecture for robust inference and accurate prediction of cellular dynamics☆52Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 8 months ago
- Accurate and fast cell marker gene identification with COSG☆38Updated last year
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 3 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆37Updated last year