morris-lab / CellOracle
This is the alpha version of the CellOracle package
☆341Updated 2 months ago
Alternatives and similar repositories for CellOracle:
Users that are interested in CellOracle are comparing it to the libraries listed below
- A tool for semi-automatic cell type classification☆345Updated 3 months ago
- Scanpy Tutorials.☆206Updated this week
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆369Updated 2 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆314Updated 8 months ago
- Benchmarking analysis of data integration tools☆338Updated 2 months ago
- A package to help convert different single-cell data formats to each other☆413Updated last year
- RNA Velocity generalized through dynamical modeling☆432Updated 3 weeks ago
- NicheNet: predict active ligand-target links between interacting cells☆521Updated 3 weeks ago
- Analysis Pipeline for Single Cell ATAC-seq☆314Updated last year
- ☆353Updated 3 years ago
- Reference mapping for single-cell genomics☆358Updated 3 weeks ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆481Updated 11 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆343Updated 9 months ago
- T/B cell receptor sequencing analysis notes☆245Updated 3 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆209Updated last month
- Single-cell epigenomics analysis tools☆247Updated last week
- R package for detecting doublets in single-cell RNA sequencing data☆448Updated last week
- A toolkit for single-cell immune profiling☆328Updated this week
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆342Updated 2 weeks ago
- TCR and BCR assembly from RNA-seq data☆298Updated this week
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆367Updated 3 months ago
- Interpretation of cell states using reference single-cell maps☆268Updated 2 weeks ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆315Updated 2 weeks ago
- Collections of library structure and sequence of popular single cell genomic methods☆453Updated 3 months ago
- Analysis of single cell RNA-seq data course☆131Updated 2 years ago
- CellRank: dynamics from multi-view single-cell data☆373Updated last month
- scripts and notebooks from sanbomics☆394Updated 3 months ago
- Differential expression analysis for single-cell RNA-seq data.☆196Updated 3 weeks ago
- Single cell RNA sequencing analysis course☆205Updated last week
- ☆257Updated 4 months ago