morris-lab / CellOracleLinks
This is the alpha version of the CellOracle package
☆366Updated 6 months ago
Alternatives and similar repositories for CellOracle
Users that are interested in CellOracle are comparing it to the libraries listed below
Sorting:
- A tool for semi-automatic cell type classification☆385Updated 2 weeks ago
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆347Updated 4 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆409Updated last month
- Scanpy Tutorials.☆218Updated this week
- Benchmarking analysis of data integration tools☆363Updated 6 months ago
- A package to help convert different single-cell data formats to each other☆433Updated last year
- Reference mapping for single-cell genomics☆374Updated last month
- RNA Velocity generalized through dynamical modeling☆451Updated 4 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆520Updated 2 weeks ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆365Updated 2 weeks ago
- scripts and notebooks from sanbomics☆426Updated 7 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆229Updated 5 months ago
- NicheNet: predict active ligand-target links between interacting cells☆550Updated last week
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆379Updated 2 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆338Updated 11 months ago
- ☆356Updated 3 years ago
- Single-cell epigenomics analysis tools☆268Updated this week
- Analysis Pipeline for Single Cell ATAC-seq☆317Updated 2 years ago
- LIANA+: an all-in-one framework for cell-cell communication☆219Updated this week
- Panoramic stitching of single cell data☆285Updated last year
- T/B cell receptor sequencing analysis notes☆259Updated 7 months ago
- TCR and BCR assembly from RNA-seq data☆313Updated this week
- Differential expression analysis for single-cell RNA-seq data.☆199Updated 4 months ago
- ☆269Updated 8 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆201Updated 2 weeks ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆290Updated 3 weeks ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆423Updated 4 months ago
- CellRank: dynamics from multi-view single-cell data☆390Updated 3 months ago
- A toolkit of spatial transcriptomic analysis.☆255Updated 2 weeks ago
- tools and notes for spatial omics☆307Updated 4 months ago