morris-lab / CellOracleLinks
This is the alpha version of the CellOracle package
☆382Updated 8 months ago
Alternatives and similar repositories for CellOracle
Users that are interested in CellOracle are comparing it to the libraries listed below
Sorting:
- A tool for semi-automatic cell type classification☆408Updated this week
- Benchmarking analysis of data integration tools☆383Updated 2 weeks ago
- Reference mapping for single-cell genomics☆383Updated last week
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆433Updated 3 months ago
- Scanpy Tutorials.☆223Updated this week
- A package to help convert different single-cell data formats to each other☆442Updated last year
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆371Updated last month
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆542Updated 3 months ago
- RNA Velocity generalized through dynamical modeling☆467Updated 7 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆380Updated last week
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆358Updated 2 months ago
- LIANA+: an all-in-one framework for cell-cell communication☆238Updated this week
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆398Updated 2 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆218Updated 3 months ago
- NicheNet: predict active ligand-target links between interacting cells☆574Updated 2 months ago
- ☆359Updated 3 years ago
- Single-cell epigenomics analysis tools☆289Updated last month
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆234Updated 8 months ago
- scripts and notebooks from sanbomics☆442Updated 10 months ago
- CellRank: dynamics from multi-view single-cell data☆397Updated last month
- tools and notes for spatial omics☆315Updated 7 months ago
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆472Updated last month
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆427Updated 3 weeks ago
- T/B cell receptor sequencing analysis notes☆265Updated 10 months ago
- Panoramic stitching of single cell data☆289Updated 2 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆319Updated 2 years ago
- Formalizing and benchmarking open problems in single-cell genomics☆398Updated last month
- ☆274Updated 10 months ago
- Spatial alignment of single cell transcriptomic data.☆325Updated 3 months ago
- Python package to perform enrichment analysis from omics data.☆225Updated this week