Alternatives and similar repositories for fastglmpca:

Users that are interested in fastglmpca are comparing it to the libraries listed below

• const-ae / transformGamPoi-Paper
  ☆26Updated last year
• kstreet13 / scry
  Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).
  ☆19Updated 9 months ago
• shchurch / countland
  tools in python and R for analyzing biological count data, especially from single cell RNAseq
  ☆22Updated last year
• heyuan7676 / ts_eQTLs
  Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model
  ☆21Updated 4 years ago
• anna-neufeld / countsplit
  ☆21Updated last year
• cziegenhain / UMIcountR
  ☆16Updated 2 years ago
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆17Updated 3 years ago
• pachterlab / RMEJLBASBMP_2024
  Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"
  ☆18Updated 2 months ago
• csglab / GEDI
  Gene Expression Decomposition and Integration
  ☆18Updated last month
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆19Updated 2 years ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• kuijjerlab / PySNAIL
  Smooth-quantile Normalization Adaptation for Inference of co-expression Links
  ☆16Updated last year
• wgmao / NIFA
  Non-negative Independent Factor Analysis for single cell RNA-seq
  ☆11Updated 3 years ago
• lingfeiwang / normalisr
  Causal inference, differential expression, and co-expression for scRNA-seq
  ☆18Updated 3 years ago
• gillislab / MetaMarkers
  Efficiently compute robust markers across single-cell datasets
  ☆11Updated 3 years ago
• DavisLaboratory / scDECAF
  Querying cellular states and programs by learning representations of gene sets
  ☆12Updated 9 months ago
• immunogenomics / cdr3-QTL
  Trans-association between HLA and TCR-CDR3
  ☆17Updated 2 years ago
• markziemann / mitch
  An R package for multi-dimensional pathway enrichment analysis
  ☆16Updated this week
• shazanfar / scHOT
  ☆10Updated last year
• shahcompbio / MultiModalMuSig.jl
  A Julia package for extracting mutation signatures using topic models
  ☆18Updated 3 years ago
• skinnider / dismay
  Calculation of distance metrics for matrices
  ☆25Updated 6 years ago
• igrabski / scRNAseq-cell-type
  Probabilistic gene expression barcodes for cell type annotation
  ☆25Updated 2 years ago
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆17Updated 2 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆21Updated last year
• tengfei-emory / scBatch
  Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment
  ☆17Updated 3 years ago
• MarioniLab / geneBasisR
  R package for gene selection using k-NN graphs.
  ☆13Updated last year
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆17Updated last week
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆21Updated 3 months ago
• const-ae / transformGamPoi
  Variance stabilizing transformation for Gamma Poisson distributed data
  ☆22Updated 2 years ago
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆19Updated 4 years ago