rs239 / velorama
Gene regulatory network inference for RNA velocity and pseudotime data
☆22Updated this week
Alternatives and similar repositories for velorama:
Users that are interested in velorama are comparing it to the libraries listed below
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆36Updated last month
- ☆22Updated 4 months ago
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆19Updated this week
- Functional Inference of Gene Regulation☆40Updated 7 months ago
- scVI extension for unspliced RNA☆16Updated 3 weeks ago
- A method for analyzing scATAC-seq experiments.☆26Updated 4 months ago
- ☆29Updated 2 years ago
- ☆11Updated 2 months ago
- R implementation of GeneTrajectory☆51Updated 10 months ago
- ☆36Updated 5 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 2 months ago
- A python package for chromVAR☆27Updated last year
- Single cell omics biology annotations☆48Updated 3 weeks ago
- ☆34Updated 4 months ago
- ☆10Updated last year
- ☆48Updated 5 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆41Updated last year
- ☆29Updated 3 weeks ago
- inferring regulatory cellular dynamics☆33Updated 3 weeks ago
- ☆20Updated 2 years ago
- Identifying external communication signals using single-cell transcriptomics data☆20Updated 8 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆18Updated last week
- Information-based dimensionality reduction☆29Updated 2 months ago
- An end-to-end computational pipeline for large Perturb-seq screens☆12Updated 2 years ago
- Multi-resolution Variational Inference☆22Updated last week
- Parse ArchR arrow files to anndata h5ad☆14Updated last year
- scOpen: single-cell open chromatin analysis via NMF modelling☆25Updated 2 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆31Updated 3 years ago
- The scripts used for the analyses in TOME project☆22Updated 2 months ago