Gene regulatory network inference for RNA velocity and pseudotime data
☆29Nov 6, 2025Updated 5 months ago
Alternatives and similar repositories for velorama
Users that are interested in velorama are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Parse ArchR arrow files to anndata h5ad☆16Dec 14, 2023Updated 2 years ago
- ☆13Jan 23, 2025Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Feb 19, 2026Updated last month
- ☆15Jul 9, 2025Updated 9 months ago
- Toolkit for single-cell DNA methylation analysis.☆47Mar 16, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Regulatory networks with Direct Information in python☆40Mar 9, 2023Updated 3 years ago
- Information-based dimensionality reduction☆29Dec 14, 2024Updated last year
- Non-parametric density inference for single-cell analysis.☆73Updated this week
- ☆10Dec 8, 2023Updated 2 years ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆30Oct 24, 2024Updated last year
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆12Oct 16, 2025Updated 5 months ago
- ☆33Oct 4, 2024Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆128Updated this week
- Dynamical information enables inference of gene regulation at single-cell scale☆12Jun 9, 2025Updated 10 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Annotatability, a method to identify meaningful patterns in single-cell genomics data through annotation-trainability analysis, which est…☆19Jun 23, 2025Updated 9 months ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Aug 30, 2024Updated last year
- Python playground for cell-type-specific biology☆12Updated this week
- This repository hosts a minimal version of a Python API for BPNet.☆56Jan 24, 2026Updated 2 months ago
- Code for scKINETICS (ISMB 2023)☆22Oct 23, 2023Updated 2 years ago
- ☆12Oct 4, 2021Updated 4 years ago
- ☆19Mar 19, 2026Updated 3 weeks ago
- ☆11Oct 6, 2017Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆12Aug 30, 2025Updated 7 months ago
- ☆42Feb 12, 2026Updated 2 months ago
- ☆65Feb 9, 2026Updated 2 months ago
- mouse_fullStack_annotations☆13Jun 29, 2023Updated 2 years ago
- GREAT algorithm in Python☆14Oct 24, 2022Updated 3 years ago
- Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…☆12Mar 22, 2024Updated 2 years ago
- ☆164Jul 3, 2024Updated last year
- Mapping pipeline for snmC-seq based technologies.☆20Sep 25, 2023Updated 2 years ago
- CellDrift: temporal perturbation effects for single cell data☆13Dec 3, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆35Jan 4, 2022Updated 4 years ago
- ☆33Apr 11, 2025Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Jul 11, 2024Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆85Aug 10, 2025Updated 8 months ago
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆13May 30, 2024Updated last year
- A python package for chromVAR☆33May 1, 2023Updated 2 years ago