☆19May 5, 2024Updated 2 years ago
Alternatives and similar repositories for STT
Users that are interested in STT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated 2 years ago
- tutorials for spateo package☆21Dec 25, 2024Updated last year
- ☆17Nov 13, 2021Updated 4 years ago
- Tool for IDentification and Enumeration of Spliced and Unspliced Read Fragments☆18Jun 23, 2026Updated last month
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆33Jun 15, 2026Updated last month
- A Toolkit for Single Cell Spatiotemporal Dynamical Generative Modeling☆17Jun 30, 2026Updated 3 weeks ago
- ☆31Aug 2, 2023Updated 2 years ago
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆21Feb 13, 2023Updated 3 years ago
- Non-parametric density inference for single-cell analysis.☆75Jun 29, 2026Updated 3 weeks ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆34Jul 13, 2024Updated 2 years ago
- ☆28Jun 4, 2023Updated 3 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆45Jun 12, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- The scripts used for the analyses in TOME project☆25Nov 28, 2025Updated 7 months ago
- ☆59Mar 23, 2025Updated last year
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆28Nov 12, 2024Updated last year
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- ☆26Aug 24, 2023Updated 2 years ago
- R implementation of GeneTrajectory☆71May 9, 2026Updated 2 months ago
- ☆162Mar 19, 2024Updated 2 years ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆88Mar 19, 2026Updated 4 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆38Feb 14, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆35Apr 4, 2025Updated last year
- This repository contains codes used for the human fetal limb cell atlas.☆17Jan 28, 2025Updated last year
- ☆33May 4, 2025Updated last year
- ☆13Sep 30, 2024Updated last year
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- ☆16Mar 8, 2024Updated 2 years ago
- Publically accessible code for DIISCO method☆13Oct 15, 2025Updated 9 months ago
- ☆45May 23, 2025Updated last year
- ☆19Jun 16, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- 🎲🧑🏻🏫 Repository for the Probabilistic Machine Learning labs/practica (@ UniTS, Spring 2023)☆10May 5, 2023Updated 3 years ago
- Map large-scale single cells to the exact spatial locations☆21Jun 9, 2026Updated last month
- [NeurIPS 2025] Implementation for the paper "Modeling Microenvironment Trajectories on Spatial Transcriptomics with NicheFlow"☆25Nov 4, 2025Updated 8 months ago
- SpotGF: Denoising Spatially Resolved Transcriptomics Data Using an Optimal Transport-Based Gene Filtering Algorithm☆21Apr 8, 2025Updated last year
- GWAS and rare variants tests at high speed using regenie☆16Feb 18, 2026Updated 5 months ago
- A minimal PyTorch implementation of BERT (Bidirectional Encoder Representations from Transformers)☆12Mar 20, 2023Updated 3 years ago