A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.
☆44Aug 21, 2025Updated 10 months ago
Alternatives and similar repositories for SVclone
Users that are interested in SVclone are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A framework to infer mutational signatures in cancer over time☆58Jul 9, 2019Updated 6 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Apr 2, 2020Updated 6 years ago
- Battenberg R package for subclonal copynumber estimation☆97May 11, 2026Updated last month
- Analysis pipeline for cancer sequencing data☆112Apr 24, 2026Updated 2 months ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 7 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆26Jan 28, 2026Updated 5 months ago
- Bayesian mixture models for estimating and clustering cancer cell fractions☆26Dec 20, 2022Updated 3 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Nov 13, 2023Updated 2 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- An R package for inferring the subclonal architecture of tumors☆124Mar 15, 2026Updated 3 months ago
- Filters for Next Generation Sequencing☆13Oct 31, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Model-based tumour subclonal deconvolution using population genetics☆37Dec 2, 2025Updated 6 months ago
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- Search for activating regulatory variants in the tumor genome☆15Apr 11, 2025Updated last year
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Aug 24, 2022Updated 3 years ago
- A tool for timing complex copy number gains in cancer.☆21Dec 4, 2025Updated 6 months ago
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆122May 26, 2026Updated last month
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Apr 2, 2024Updated 2 years ago
- TNER: Tri-Nucleotide Error Reducer for ctDNA detection☆21Aug 23, 2019Updated 6 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ASCAT R package☆202Feb 12, 2026Updated 4 months ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- Evolutionary frequency visualization tool of temporal data☆24Jan 25, 2022Updated 4 years ago
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 5 years ago
- ☆51Aug 27, 2019Updated 6 years ago
- Battenberg algorithm and associated implementation script☆54Oct 21, 2020Updated 5 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Mar 24, 2026Updated 3 months ago
- Single-cell Bisulfite Sequencing Data Mapping☆13May 19, 2021Updated 5 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆14Apr 9, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data☆14Dec 24, 2023Updated 2 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Nov 5, 2020Updated 5 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆33Feb 18, 2026Updated 4 months ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆235May 15, 2025Updated last year
- DriverPower☆26Jan 18, 2025Updated last year
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated 11 months ago