A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.
☆45Aug 21, 2025Updated last year
Alternatives and similar repositories for SVclone
Users that are interested in SVclone are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A framework to infer mutational signatures in cancer over time☆57Jul 9, 2019Updated 7 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 8 years ago
- Battenberg R package for subclonal copynumber estimation☆100May 11, 2026Updated 5 months ago
- TNER: Tri-Nucleotide Error Reducer for ctDNA detection☆21Aug 23, 2019Updated 7 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆19Apr 2, 2020Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆27Aug 31, 2026Updated 2 months ago
- Analysis pipeline for cancer sequencing data☆112Sep 28, 2026Updated last month
- A tool for timing complex copy number gains in cancer.☆23Oct 24, 2026Updated last week
- Fast method for inferring cancer clonal population structure from SNV data.☆76Jan 20, 2026Updated 9 months ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆16Mar 6, 2024Updated 2 years ago
- An R package for inferring the subclonal architecture of tumors☆125Mar 15, 2026Updated 7 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆44Apr 18, 2024Updated 2 years ago
- Battenberg algorithm and associated implementation script☆55Oct 21, 2020Updated 6 years ago
- Bayesian mixture models for estimating and clustering cancer cell fractions☆26Dec 20, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated 2 years ago
- Model-based tumour subclonal deconvolution using population genetics☆36Dec 2, 2025Updated 10 months ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Nov 13, 2023Updated 2 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Aug 24, 2022Updated 4 years ago
- ASCAT R package☆205Feb 12, 2026Updated 8 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆45Apr 16, 2021Updated 5 years ago
- Mutational signature analysis for low statistics SNV data☆67Aug 7, 2024Updated 2 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆34Feb 18, 2026Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Python function for TMB snake plots☆16Feb 12, 2026Updated 8 months ago
- DriverPower☆26Jan 18, 2025Updated last year
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- Repository for signature genes from Immune Cell Atlas☆20Sep 25, 2019Updated 7 years ago
- Evolutionary frequency visualization tool of temporal data☆24Jan 25, 2022Updated 4 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- ☆10Jul 19, 2024Updated 2 years ago
- ☆12Apr 25, 2024Updated 2 years ago
- Multi-sample cancer phylogeny reconstruction☆36Oct 19, 2017Updated 9 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆11May 19, 2020Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25May 2, 2018Updated 8 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆243Aug 25, 2026Updated 2 months ago
- Single Cell Genomes with Allele Specificity☆14Oct 6, 2026Updated 3 weeks ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆72Aug 22, 2021Updated 5 years ago
- Haplotype-aware Hidden Markov Models for detecting CNVs from bulk RNA-seq☆13Apr 2, 2024Updated 2 years ago