HumanCellAtlas / skylabLinks
Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines
☆48Updated 6 months ago
Alternatives and similar repositories for skylab
Users that are interested in skylab are comparing it to the libraries listed below
Sorting:
- Pipeline for processing inDrops sequencing data☆76Updated 6 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆43Updated last year
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- R package containing useful functions for mutational signature analysis☆84Updated last week
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 8 months ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Repo for Physalia course Analysis of Single Cell RNA-Seq data☆32Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆90Updated 6 months ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 7 years ago
- Normalization for single cell RNA-seq data☆48Updated 3 months ago
- An R client for broads firehose pipeline, providing TCGA data sets☆61Updated 6 years ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆65Updated 2 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆57Updated 4 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 11 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆59Updated 3 months ago
- Functional genomics and genome-wide association studies☆67Updated 7 years ago
- ☆55Updated 7 months ago
- collection of notebooks with different cytoscape workflows☆50Updated 2 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- ☆55Updated 4 years ago
- Identify and correct invalid gene symbols☆59Updated 10 months ago
- Robust Allele Specific Quantification and quality controL☆40Updated 3 years ago