YosefLab / VISION
Signature Analysis and Visualization for Single-Cell RNA-seq
☆165Updated 10 months ago
Alternatives and similar repositories for VISION:
Users that are interested in VISION are comparing it to the libraries listed below
- SingleCellNet: classify single cells across species and platforms☆137Updated last year
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆161Updated last year
- A Bayesian model for compositional single-cell data analysis☆160Updated last year
- Episcanpy: Epigenomics Single Cell Analysis in Python☆143Updated 4 months ago
- Multiome GRN inference.☆120Updated 11 months ago
- AUCell: score single cells with gene regulatory networks☆149Updated last year
- Conversion between scRNA-seq objects☆170Updated this week
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆227Updated last year
- Methods to discover gene programs on single-cell data☆109Updated 3 weeks ago
- Tools for single-cell data processing☆123Updated 10 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆115Updated 7 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆142Updated 3 months ago
- Cell type prioritization in single-cell data☆114Updated 5 months ago
- Cell types enrichment analysis☆194Updated 10 months ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆199Updated 8 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆152Updated 2 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆197Updated last year
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- Gene set scoring for single-cell data☆148Updated 5 months ago
- Detect doublets in single-cell RNA-seq data☆146Updated 4 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆101Updated last year
- Methods for detecting doublets in single-cell sequencing data☆187Updated 3 weeks ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆208Updated last year
- Automated, probabilistic assignment of cell types in scRNA-seq data☆199Updated 2 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆103Updated 2 years ago
- chromatin Variability Across Regions (of the genome!)☆172Updated 9 months ago
- R package to access DoRothEA's regulons☆143Updated last year
- ☆164Updated 7 months ago
- Automated cell type classification☆111Updated 3 months ago