Signature Analysis and Visualization for Single-Cell RNA-seq
☆185Jun 10, 2024Updated 2 years ago
Alternatives and similar repositories for VISION
Users that are interested in VISION are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package implementation of Milo for testing for differential abundance in KNN graphs☆446Updated this week
- Assessing the purity of single cell population☆156Jun 3, 2022Updated 4 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆92Dec 4, 2025Updated 8 months ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆230Jul 2, 2026Updated last month
- Cell type prioritization in single-cell data☆149Mar 26, 2026Updated 5 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- NicheNet: predict active ligand-target links between interacting cells☆673Jun 1, 2026Updated 2 months ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆215Jan 9, 2023Updated 3 years ago
- Quantifying metabolism activity at the single-cell resolution☆195Aug 20, 2026Updated last week
- AUCell: score single cells with gene regulatory networks☆202Mar 9, 2024Updated 2 years ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆496Apr 5, 2024Updated 2 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆309Jun 17, 2025Updated last year
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆127Apr 16, 2025Updated last year
- Multi-sample multi-group scRNA-seq analysis tools☆240Jul 6, 2026Updated last month
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆481Jan 22, 2026Updated 7 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Single cell RNA-seq analysis bundle☆37Sep 13, 2019Updated 6 years ago
- Reference mapping for single-cell genomics☆407Jun 26, 2026Updated 2 months ago
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 8 months ago
- Conversion between scRNA-seq objects☆209May 5, 2026Updated 3 months ago
- R package to infer biological activities from omics data using a collection of methods.☆304Dec 16, 2025Updated 8 months ago
- Spatial reconstruction of dissociated single-cell data☆20Jan 12, 2024Updated 2 years ago
- HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data☆104Jul 19, 2021Updated 5 years ago
- ☆312Nov 10, 2024Updated last year
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆184Dec 18, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Tools and methods for analysis of single cell assay data in R☆264Oct 17, 2025Updated 10 months ago
- Shiny Interactive Web Apps for Single-Cell Data☆217Apr 24, 2025Updated last year
- post-clustering differential expression test☆37May 28, 2019Updated 7 years ago
- Clone identification from single-cell data☆66Nov 10, 2022Updated 3 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆247Aug 7, 2024Updated 2 years ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆188Jun 24, 2021Updated 5 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆244May 8, 2023Updated 3 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆560Mar 21, 2025Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆124Apr 26, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package for single cell and other data analysis using diffusion maps☆109Jul 22, 2026Updated last month
- R package for integrating and analyzing multiple single-cell datasets☆432Aug 18, 2026Updated last week
- Bench-marking classification tools for scRNA-seq data☆196Jun 9, 2022Updated 4 years ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆388Oct 3, 2024Updated last year
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆345Apr 23, 2024Updated 2 years ago
- Scissor package☆274May 10, 2024Updated 2 years ago
- Linear trajectory inference for single-cell RNA-seq☆63Nov 26, 2025Updated 9 months ago