Alternatives and similar repositories for VISION:

Users that are interested in VISION are comparing it to the libraries listed below

• theislab / kBET
  An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
  ☆161Updated last year
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆158Updated last year
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆146Updated last year
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆184Updated last month
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆140Updated 2 months ago
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆163Updated this week
• CahanLab / singleCellNet
  SingleCellNet: classify single cells across species and platforms
  ☆136Updated last year
• dviraran / xCell
  Cell types enrichment analysis
  ☆194Updated 9 months ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆113Updated 6 months ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆182Updated last month
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆226Updated last year
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆196Updated 7 months ago
• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆144Updated 4 months ago
• colomemaria / epiScanpy
  Episcanpy: Epigenomics Single Cell Analysis in Python
  ☆142Updated 3 months ago
• quadbio / Pando
  Multiome GRN inference.
  ☆119Updated 11 months ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆137Updated 3 years ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆140Updated 3 years ago
• neurorestore / Libra
  ☆163Updated 6 months ago
• kharchenkolab / pagoda2
  R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
  ☆223Updated last year
• ShobiStassen / VIA
  trajectory inference
  ☆97Updated last month
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆125Updated last month
• carmonalab / GeneNMF
  Methods to discover gene programs on single-cell data
  ☆105Updated 2 weeks ago
• timoast / sinto
  Tools for single-cell data processing
  ☆122Updated 9 months ago
• Swarbricklab-code / BrCa_cell_atlas
  Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".
  ☆113Updated 5 months ago
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆113Updated 4 months ago
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆178Updated last month
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆103Updated 2 years ago
• crazyhottommy / scclusteval
  Single Cell Cluster Evaluation
  ☆92Updated 3 years ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆100Updated last month
• cortes-ciriano-lab / SComatic
  A tool for detecting somatic variants in single cell data
  ☆193Updated 6 months ago