XEnograft Visualization & Analysis
☆11Oct 18, 2025Updated 4 months ago
Alternatives and similar repositories for Xeva
Users that are interested in Xeva are comparing it to the libraries listed below
Sorting:
- ☆10Apr 30, 2019Updated 6 years ago
- single cell and bulk RNASeq analysis scripts☆14Jan 13, 2022Updated 4 years ago
- ☆13Jan 24, 2024Updated 2 years ago
- Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage☆12Aug 13, 2020Updated 5 years ago
- Load bioinformatics datasets into a local database☆11Apr 8, 2025Updated 10 months ago
- tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.☆11Dec 5, 2023Updated 2 years ago
- ☆16Apr 11, 2022Updated 3 years ago
- A Template for Clear and Simple Documentation of Bioinformatics Code☆16Jan 24, 2018Updated 8 years ago
- ☆16Sep 21, 2021Updated 4 years ago
- R package to analyze large-scale pharmacogenomic datasets.☆71Feb 9, 2026Updated 3 weeks ago
- Research Paper: "Graph Contrastive Learning as a Versatile Foundation for Advanced scRNA-seq Data Analysis"☆10Nov 20, 2024Updated last year
- Detection of super-enhancers in cancer data☆21Apr 10, 2023Updated 2 years ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆22Oct 8, 2025Updated 4 months ago
- CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer☆29Sep 12, 2025Updated 5 months ago
- Shiny GUI application for genomics meta-analysis☆22Nov 4, 2020Updated 5 years ago
- A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis☆21Feb 14, 2024Updated 2 years ago
- Toolbox package for organizing and working with TCGA data☆28Dec 11, 2025Updated 2 months ago
- ☆28Jan 25, 2022Updated 4 years ago
- 📊 An R package for interactively exploring UCSC Xena https://xenabrowser.net/datapages/; Book: https://lishensuo.github.io/UCSCXenaShiny…☆104Feb 8, 2026Updated 3 weeks ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆29Dec 23, 2019Updated 6 years ago
- DRUGZ software☆24Aug 9, 2021Updated 4 years ago
- Madrigal: Multimodal AI predicts clinical outcomes of drug combinations from preclinical data☆39Jul 31, 2025Updated 7 months ago
- An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.…☆113Feb 6, 2026Updated 3 weeks ago
- Gene set enrichment analysis for single-cell RNAseq data☆31Feb 17, 2023Updated 3 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Jul 10, 2023Updated 2 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 5 years ago
- ☆12Oct 29, 2025Updated 4 months ago
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆70Updated this week
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆32Jan 28, 2026Updated last month
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆32Mar 10, 2023Updated 2 years ago
- ☆38Jul 26, 2016Updated 9 years ago
- IAN: An Intelligent System for Omics Data Analysis and Discovery☆10Feb 23, 2026Updated last week
- ☆10Aug 5, 2021Updated 4 years ago
- Drug Response Prediction and Biomarker Discovery Using Multi-Modal Deep Learning☆14Apr 24, 2024Updated last year
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆37Dec 16, 2020Updated 5 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Jan 6, 2021Updated 5 years ago
- Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org☆13Updated this week
- Enhanced Chromatin Occupancy (EChO)☆13Jan 8, 2020Updated 6 years ago