HuMingLab / SnapHiCLinks
SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data
☆41Updated 2 years ago
Alternatives and similar repositories for SnapHiC
Users that are interested in SnapHiC are comparing it to the libraries listed below
Sorting:
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated last year
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆32Updated 4 months ago
- ☆19Updated 2 years ago
- ☆18Updated 4 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆44Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- ☆12Updated 2 years ago
- ☆49Updated last year
- Chromatin States Map in mouse embryonic stem cell☆15Updated 7 years ago
- binned motif enrichment analysis and visualisation☆41Updated 3 weeks ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- ☆20Updated 6 years ago
- Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Lars…☆39Updated last year
- Toolkit for single-cell DNA methylation analysis.☆42Updated 2 weeks ago
- R package with motifs for use with chromVAR☆28Updated 7 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆30Updated 2 years ago
- ☆67Updated 2 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ☆11Updated 4 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 7 months ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 3 months ago
- ☆35Updated 2 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago