Metacell - Single-cell mRNA Analysis
☆121Mar 16, 2026Updated 3 months ago
Alternatives and similar repositories for metacell
Users that are interested in metacell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Metacells - Single-cell RNA Sequencing Analysis☆126Apr 20, 2026Updated 2 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆102Apr 16, 2026Updated 2 months ago
- A shiny app for metacell analysis☆10Jun 1, 2026Updated last month
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆192Mar 27, 2025Updated last year
- Tools and methods for analysis of single cell assay data in R☆265Oct 17, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆29May 15, 2024Updated 2 years ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆187Jun 24, 2021Updated 5 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆83Jul 25, 2025Updated 11 months ago
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆16Jun 28, 2024Updated 2 years ago
- Assessing the purity of single cell population☆151Jun 3, 2022Updated 4 years ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆98Nov 30, 2023Updated 2 years ago
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 6 months ago
- Methods for detecting doublets in single-cell sequencing data☆256Jun 23, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Quantifying metabolism activity at the single-cell resolution☆186Feb 18, 2026Updated 4 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆332Nov 1, 2022Updated 3 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆122Apr 26, 2025Updated last year
- ☆364Dec 9, 2021Updated 4 years ago
- Some tools for plotting single-cell data☆178May 17, 2025Updated last year
- A tool for semi-automatic cell type classification☆491May 22, 2026Updated last month
- scPred package for cell type prediction from scRNA-seq data☆103Jan 18, 2024Updated 2 years ago
- ☆25Aug 5, 2025Updated 10 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆19Dec 19, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A toolkit for single-cell immune profiling☆371Jun 27, 2026Updated last week
- R package implementation of Milo for testing for differential abundance in KNN graphs☆436May 11, 2026Updated last month
- ☆48Apr 18, 2020Updated 6 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆553Mar 21, 2025Updated last year
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆339Apr 23, 2024Updated 2 years ago
- Multi-sample multi-group scRNA-seq analysis tools☆235Jun 4, 2026Updated last month
- Inference of cell-cell communication from single-cell RNAseq data☆49Apr 21, 2025Updated last year
- Single cell trajectory detection☆322Apr 21, 2026Updated 2 months ago
- ☆10May 31, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Multi-subject Single Cell Deconvolution☆301Mar 4, 2024Updated 2 years ago
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆242Apr 3, 2026Updated 3 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆191Aug 12, 2025Updated 10 months ago
- Spatial alignment of single cell transcriptomic data.☆370Jul 1, 2025Updated last year
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆226Mar 2, 2026Updated 4 months ago
- Shiny Interactive Web Apps for Single-Cell Data☆212Apr 24, 2025Updated last year
- NicheNet: predict active ligand-target links between interacting cells☆662Jun 1, 2026Updated last month