tanaylab / metacellLinks
Metacell - Single-cell mRNA Analysis
☆117Updated 10 months ago
Alternatives and similar repositories for metacell
Users that are interested in metacell are comparing it to the libraries listed below
Sorting:
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- Single Cell Cluster Evaluation☆98Updated 4 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆112Updated last month
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆110Updated 7 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- R package for semi-supervised single-cell data integration☆90Updated 3 months ago
- AUCell: score single cells with gene regulatory networks☆177Updated last year
- Metacells - Single-cell RNA Sequencing Analysis☆116Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆86Updated 7 months ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆71Updated 4 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆131Updated 4 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆93Updated this week
- R package for Pathway RespOnsive GENe activity inference☆111Updated 2 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 5 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆120Updated last year
- ☆73Updated 2 years ago
- ☆64Updated 6 years ago
- ☆63Updated 5 years ago
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- Publication Page for MPAL Paper 2019☆83Updated 5 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆113Updated this week
- A Shiny web app for mapping datasets using Seurat v4☆140Updated last year
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 5 years ago
- ☆44Updated last week
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆64Updated 3 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆91Updated 6 months ago
- ☆46Updated 3 years ago