tanaylab / metacellLinks
Metacell - Single-cell mRNA Analysis
☆115Updated 4 months ago
Alternatives and similar repositories for metacell
Users that are interested in metacell are comparing it to the libraries listed below
Sorting:
- Metacells - Single-cell RNA Sequencing Analysis☆107Updated 8 months ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- R package for semi-supervised single-cell data integration☆82Updated last month
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆73Updated 5 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆112Updated 2 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆105Updated 2 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆88Updated 11 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆81Updated 9 months ago
- Multiome GRN inference.☆124Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Tools for single-cell data processing☆125Updated last year
- A Bayesian model for compositional single-cell data analysis☆165Updated 2 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 2 months ago
- R package for pathway analysis in scRNA-seq data☆73Updated 10 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 4 years ago
- R package to visualize gene expression data based on weighted kernel density estimation☆103Updated last year
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆107Updated 2 months ago
- ☆63Updated 4 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆116Updated 9 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 3 years ago
- Gene set scoring for single-cell data☆153Updated last month
- Publication Page for MPAL Paper 2019☆82Updated 4 years ago
- ☆68Updated last year
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆82Updated last year
- Methods to compute Local Inverse Simpson's Index (LISI)☆62Updated 3 years ago
- Methods to discover gene programs on single-cell data☆124Updated last week
- ☆46Updated 3 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆73Updated 5 years ago
- ☆61Updated 5 years ago
- Analysis of cell-cell communication at single-cell resolution☆102Updated 9 months ago