☆12Mar 18, 2026Updated 4 months ago
Alternatives and similar repositories for cicero
Users that are interested in cicero are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Aug 8, 2022Updated 3 years ago
- ☆22Jul 3, 2019Updated 7 years ago
- ☆20Jun 8, 2023Updated 3 years ago
- Extension of SpatialExperiment with sf☆57May 6, 2026Updated 2 months ago
- Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)☆31May 16, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated last year
- gkmSVM R package☆17Jan 15, 2018Updated 8 years ago
- A toolset to analyze genomic footprinting data☆20Jul 20, 2026Updated last week
- ☆15Apr 8, 2026Updated 3 months ago
- single nuclei RNA-seq analysis toolbox☆10Oct 26, 2016Updated 9 years ago
- ☆16Mar 16, 2017Updated 9 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆22May 9, 2023Updated 3 years ago
- ☆10Sep 20, 2022Updated 3 years ago
- ☆12Jul 6, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Toolkit for Single-Cell Velocity☆61Apr 17, 2026Updated 3 months ago
- Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files☆13Jan 31, 2016Updated 10 years ago
- sake☆29Feb 8, 2023Updated 3 years ago
- A package for analyzing spatial transcriptomics data with Gaussian smoothing, spatial gene correlation network clustering, gene module vi…☆22Apr 3, 2026Updated 3 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆50Sep 1, 2023Updated 2 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- ☆13Jun 18, 2026Updated last month
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Jul 6, 2023Updated 3 years ago
- Scripts for processing sci-RNA-seq/sci-ATAC-seq/sci-CAR reads processing☆15Dec 12, 2018Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- RNAseq analysis in R workshop, originally taught: http://combine-australia.github.io/2016-05-11-RNAseq/☆24Dec 1, 2020Updated 5 years ago
- ☆17Apr 27, 2023Updated 3 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆17Jun 28, 2025Updated last year
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆18Jul 14, 2023Updated 3 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆88Apr 23, 2025Updated last year
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆35Apr 17, 2023Updated 3 years ago
- ☆59Mar 18, 2026Updated 4 months ago
- Multi-nucleotide Variation Annotation Corrector☆11Dec 13, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆15Aug 25, 2022Updated 3 years ago
- analysis script for GBM single cell RNA seq data☆22May 26, 2021Updated 5 years ago
- ☆16Jun 11, 2017Updated 9 years ago
- Tissue-specific variant annotation☆10Nov 19, 2018Updated 7 years ago
- Subpopulation detection in high-dimensional single-cell data☆142Oct 22, 2020Updated 5 years ago
- parallel-fastq-dump implementation in bash script☆41Nov 28, 2019Updated 6 years ago
- ☆32Jan 7, 2026Updated 6 months ago