cole-trapnell-lab / cicero
☆11Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for cicero
- A method to rapidly assess cell type identity using both functional and random gene sets☆14Updated 5 years ago
- epigenome analysis to rank transcription factors☆13Updated 4 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆13Updated 3 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 5 years ago
- Moana: Robust cell type classification of single-cell RNA-Seq data☆22Updated 6 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆12Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆24Updated 3 years ago
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆27Updated 6 months ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆34Updated 3 years ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- Dynamical systems methods for RNA velocity analysis☆23Updated 3 years ago
- Predicted cell-cell interactions of the aging mouse brain☆19Updated 5 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 5 years ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 3 years ago
- Single cell interactive plotting tools☆23Updated 4 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated last month
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 2 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆24Updated 5 months ago
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Updated 3 years ago
- ☆16Updated 3 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- A Julia package for extracting mutation signatures using topic models☆18Updated 2 years ago
- Automated cell filtering for single-cell RNA sequencing data☆24Updated last year
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆12Updated 4 years ago
- ☆11Updated 3 years ago
- Code associated with MIX-seq manuscript☆14Updated 4 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- Repository for supplemental material of manuscripts☆18Updated 3 years ago