cole-trapnell-lab / ciceroLinks
☆12Updated last year
Alternatives and similar repositories for cicero
Users that are interested in cicero are comparing it to the libraries listed below
Sorting:
- netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation☆28Updated last year
- Moana: Robust cell type classification of single-cell RNA-Seq data☆24Updated 6 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- ☆37Updated last month
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 6 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆14Updated 4 years ago
- Single cell interactive plotting tools☆23Updated 5 years ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Calibrate and compare methods for denoising single-cell RNA-seq data☆2Updated 4 years ago
- Comparison of single cell normalization strategies☆10Updated 3 years ago
- Bayesian model selection to detect zero-inflated genes☆8Updated 5 years ago
- ☆29Updated 2 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆12Updated 4 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- Comparison of dimensionality reduction methods☆30Updated 5 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:☆34Updated 2 years ago
- ☆21Updated 8 years ago
- ☆16Updated 6 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- ☆12Updated 4 years ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆22Updated 5 years ago