Alternatives and similar repositories for MTseeker

Users that are interested in MTseeker are comparing it to the libraries listed below

• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated last year
• beroukhim-lab / ascets
  This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…
  ☆18Updated last year
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated last year
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 7 months ago
• researchapps / polysolver
  Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…
  ☆14Updated 8 years ago
• caravagnalab / CNAqc
  Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation
  ☆22Updated 3 weeks ago
• itsvenu / ALPS
  AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project
  ☆16Updated 2 years ago
• PoisonAlien / somaticfreq
  knowledge-based genotyping of cancer hotspots from the tumor BAM files
  ☆21Updated 3 years ago
• smshuai / DriverPower
  DriverPower
  ☆26Updated 9 months ago
• parklab / MSIprofiler
  Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data
  ☆20Updated last year
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 7 years ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆39Updated 2 weeks ago
• flemingtonlab / SpliceTools
  ☆17Updated last year
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆36Updated 2 years ago
• chess-genome / chess
  Comprehensive Human Expressed SequenceS
  ☆18Updated 3 months ago
• umccr / umccrise
  DRAGEN Tumor/Normal workflow post-processing
  ☆23Updated 2 years ago
• genemine / iread
  iread
  ☆25Updated 4 years ago
• mskilab-org / gTrack
  R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework
  ☆17Updated 9 months ago
• chrisamiller / copyCat
  a parallel R package for detecting copy-number alterations from short sequencing reads
  ☆23Updated 4 years ago
• BIMSBbioinfo / HOT-or-not-examining-the-basis-of-high-occupancy-target-regions
  HOT regions paper
  ☆11Updated 6 years ago
• morrislab / pairtree
  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…
  ☆40Updated last year
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated last week
• markrobinsonuzh / diff_splice_paper
  Code for differential splicing comparison paper (Soneson, Matthes, et al.)
  ☆20Updated 9 years ago
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated this week
• churchill-lab / emase
  Expectation-Maximization algorithm for Allele-Specific Expression
  ☆21Updated 2 years ago
• nriddiford / cnvPlotteR
  Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec
  ☆13Updated 5 years ago
• yasinkaymaz / singleCellRNAseq_workshop
  Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.
  ☆16Updated 6 years ago
• SimoneTiberi / BANDITS
  BANDITS: Bayesian ANalysis of DIfferenTial Splicing
  ☆18Updated last month