trichelab / MTseekerLinks
mitochondrial variant analysis tools
☆14Updated 4 years ago
Alternatives and similar repositories for MTseeker
Users that are interested in MTseeker are comparing it to the libraries listed below
Sorting:
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Filter and prioritize fusion calls☆20Updated 8 months ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated last month
- ☆15Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- CNV analysis workflow code for the manuscript☆13Updated 5 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 2 months ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆13Updated 8 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- DriverPower☆26Updated 5 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆15Updated 5 years ago
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- An interactive graphical illustration of genetic associations and their biological context☆16Updated last year
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- iread☆24Updated 3 years ago
- ☆23Updated 4 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- ☆21Updated last year
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆13Updated this week
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 8 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆16Updated 5 months ago