mitochondrial variant analysis tools
☆15Mar 4, 2021Updated 5 years ago
Alternatives and similar repositories for MTseeker
Users that are interested in MTseeker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a tool for predicting mitochondrial DNA deletions using soft-clipping☆23Feb 3, 2022Updated 4 years ago
- ☆16Apr 10, 2024Updated 2 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Jun 11, 2026Updated last week
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Dec 11, 2018Updated 7 years ago
- ☆14Oct 29, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Mitochondria Analyzer☆29Dec 13, 2022Updated 3 years ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆44Sep 8, 2025Updated 9 months ago
- Suite of tools for pangenomics built using vg☆25Mar 6, 2026Updated 3 months ago
- ARCHIVED☆11May 10, 2022Updated 4 years ago
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 4 years ago
- An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal☆16Feb 5, 2026Updated 4 months ago
- A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis☆21Feb 14, 2024Updated 2 years ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- detection of mutations causing splicing change☆13Oct 6, 2022Updated 3 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Jun 10, 2022Updated 4 years ago
- HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.☆79Feb 28, 2023Updated 3 years ago
- phy-mer☆11Oct 12, 2017Updated 8 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆41Apr 13, 2026Updated 2 months ago
- ☆18Jul 9, 2018Updated 7 years ago
- Basic UPD caller☆12Aug 23, 2021Updated 4 years ago
- ☆16Oct 17, 2024Updated last year
- R Interface to the NCBI SRA metadata☆23Nov 19, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆14Jun 4, 2026Updated 2 weeks ago
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 9 years ago
- MultiBreak-SV identifies structural variants from next-generation paired end data, third-generation long read data, or data from a combin…☆12Jul 19, 2016Updated 9 years ago
- R package to visualize scRNA sequencing data.☆21Feb 4, 2022Updated 4 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Keep Me Around: Intron Retention Detection☆30Jan 30, 2019Updated 7 years ago
- Detection of super-enhancers in cancer data☆21Apr 10, 2023Updated 3 years ago
- Fast motif matching in R☆48Jan 24, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis☆26Dec 15, 2025Updated 6 months ago
- Materials for GCB535 at Penn.☆21Apr 19, 2019Updated 7 years ago
- ☆24Jul 29, 2025Updated 10 months ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Jun 13, 2022Updated 4 years ago
- fast webservices based query tool for large sets of genomic features☆26May 10, 2025Updated last year
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 9 years ago
- ☆17Mar 6, 2024Updated 2 years ago