trichelab / MTseeker
mitochondrial variant analysis tools
☆14Updated 4 years ago
Alternatives and similar repositories for MTseeker:
Users that are interested in MTseeker are comparing it to the libraries listed below
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 9 months ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- a set of NGS pipelines☆24Updated this week
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 2 months ago
- Filter and prioritize fusion calls☆20Updated 7 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- R package to detect splicing QTLs (sQTLs)☆15Updated 4 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆21Updated 2 months ago
- DriverPower☆26Updated 3 months ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆11Updated 2 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- An interactive graphical illustration of genetic associations and their biological context☆16Updated last year
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 10 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆13Updated 8 years ago
- CNV analysis workflow code for the manuscript☆13Updated 4 years ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 8 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- interactive plots for differential expression analysis☆32Updated last month
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆15Updated 4 years ago
- ☆23Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Updated 6 months ago