cboix / epimap_vis
Code for EpiMap data browser
☆14Updated 11 months ago
Alternatives and similar repositories for epimap_vis
Users that are interested in epimap_vis are comparing it to the libraries listed below
Sorting:
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Updated 3 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 3 weeks ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 9 months ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Updated 2 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- ☆12Updated 11 months ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Gene-level general linear mixed model☆21Updated 3 months ago
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 5 months ago
- Code associated with MIX-seq manuscript☆15Updated 4 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆11Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- scRNA-Seq analysis vignettes☆9Updated 3 years ago
- Mean Alterations Using Discrete Expression☆14Updated last year
- Molecular Signatures Database (MSigDB) in a data frame☆17Updated 6 years ago
- Explore the cancer relevance of your gene list☆51Updated 2 months ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- Workflow for Sequenza, cellularity and ploidy☆18Updated last month