yanailab / celseq2Links
Generate the UMI count matrix from CEL-Seq2 sequencing data
☆20Updated 6 years ago
Alternatives and similar repositories for celseq2
Users that are interested in celseq2 are comparing it to the libraries listed below
Sorting:
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 7 months ago
- ☆32Updated 6 years ago
- ☆41Updated last week
- ☆17Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆50Updated 4 years ago
- ☆49Updated 10 months ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year
- ☆21Updated 5 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 5 months ago
- ☆34Updated last year
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆48Updated 10 months ago
- ☆34Updated 6 years ago
- R code for single-cell analysis of intestinal epithelial cells☆22Updated 7 years ago
- ☆32Updated 5 months ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆15Updated last year
- ☆27Updated 11 months ago
- ☆27Updated 3 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- ☆47Updated 5 years ago
- ☆17Updated 6 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year