yanailab / celseq2
Generate the UMI count matrix from CEL-Seq2 sequencing data
☆20Updated 6 years ago
Alternatives and similar repositories for celseq2:
Users that are interested in celseq2 are comparing it to the libraries listed below
- ☆32Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- ☆49Updated 9 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 5 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- ☆16Updated 6 years ago
- ☆33Updated last year
- Single Cell Analysis of Five'Ends☆49Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆57Updated last month
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆47Updated 9 months ago
- An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.☆29Updated 2 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- Toolkit for single-cell copy number analysis☆23Updated 6 months ago
- ☆17Updated 10 months ago
- ☆34Updated 5 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- ☆27Updated 3 years ago
- Inferring CNV data from single cell ATAC seq☆23Updated last year
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- ☆17Updated 4 years ago
- Codes associated with the Poran, Nötzel et al. paper titled "Single-cell RNA-seq reveals a signature of sexual commitment in malaria para…☆10Updated 7 years ago
- ☆30Updated 3 months ago
- ☆20Updated 6 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆26Updated last month
- ☆37Updated 3 years ago