saezlab / footprints
Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"
☆20Updated 6 years ago
Alternatives and similar repositories for footprints:
Users that are interested in footprints are comparing it to the libraries listed below
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago
- ☆47Updated 8 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- ☆40Updated 4 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- ☆30Updated 2 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆35Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- Bead-based single-cell atac processing☆32Updated 3 years ago
- ☆33Updated 11 months ago
- binned motif enrichment analysis and visualisation☆40Updated 3 weeks ago
- ☆12Updated 9 months ago
- ☆18Updated last year
- Clone of the Bioconductor repository for the batchelor package.☆16Updated last month
- A clusterability measure for scRNA-seq data.☆18Updated 3 years ago
- ☆47Updated 3 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆21Updated 4 months ago
- scRNA-seq cell type identification☆44Updated 5 years ago
- ☆32Updated 5 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- ☆30Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- ☆38Updated 2 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated 2 years ago