Implementation of FACETS for Terra
☆12Jan 20, 2023Updated 3 years ago
Alternatives and similar repositories for facets
Users that are interested in facets are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- ☆11Apr 25, 2024Updated 2 years ago
- ☆13Sep 24, 2025Updated 9 months ago
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Mutational Signature Comprehensive Analysis Toolkit☆16Apr 11, 2026Updated 3 months ago
- Search for activating regulatory variants in the tumor genome☆15Apr 11, 2025Updated last year
- MSKCC Reis-Filho Lab pipeline thingy☆18Jun 9, 2026Updated last month
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Aug 22, 2022Updated 3 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Apr 10, 2019Updated 7 years ago
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Jan 31, 2023Updated 3 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Jan 31, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆20Oct 24, 2023Updated 2 years ago
- SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions☆11May 2, 2024Updated 2 years ago
- DriverPower☆26Jan 18, 2025Updated last year
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- ☆18Jan 30, 2023Updated 3 years ago
- Battenberg algorithm and associated implementation script☆54Oct 21, 2020Updated 5 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Jan 15, 2020Updated 6 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Jan 17, 2020Updated 6 years ago
- Utility functions for FACETS☆40Oct 24, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- DolphinNext Tutorial documents☆16Jul 5, 2021Updated 5 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆24Jul 15, 2021Updated 5 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20May 19, 2026Updated 2 months ago
- Pure Julia implementation of 1D & 2D cubic Hermite spline interpolation.☆13Sep 6, 2024Updated last year
- Browser extension for accessing open data resources in the biomedical domain☆11Jan 8, 2023Updated 3 years ago
- Filters for false-positive mutation calls in NGS☆34Apr 12, 2019Updated 7 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 5 years ago
- Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma☆13Jun 4, 2023Updated 3 years ago
- Model-based tumour subclonal deconvolution using population genetics☆36Dec 2, 2025Updated 7 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Repository of the TRanslational ONCOlogy library, which includes various algorithms (such as CAPRESE and CAPRI) and the Pipeline for Canc…☆30Apr 7, 2026Updated 3 months ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆67Jun 30, 2026Updated 3 weeks ago
- RNA-seq data comprehensive data analysis toolbox☆20Oct 18, 2022Updated 3 years ago
- ☆80Jul 12, 2023Updated 3 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Jul 6, 2026Updated 2 weeks ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆44Aug 21, 2025Updated 10 months ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆32Mar 10, 2023Updated 3 years ago