vanallenlab / facetsLinks
Implementation of FACETS for Terra
☆12Updated 2 years ago
Alternatives and similar repositories for facets
Users that are interested in facets are comparing it to the libraries listed below
Sorting:
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last month
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 9 months ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated 3 months ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 11 months ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 4 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 6 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Updated 3 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Updated 5 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Updated 4 years ago
- scover☆24Updated 2 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions☆11Updated last year
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- Somatic indel discovery tool for tumor RNA-Seq data.☆23Updated last month
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Updated 2 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- cDriver R package for finding candidate driver genes in cancers☆18Updated 8 years ago
- Utility functions for FACETS☆39Updated 2 months ago
- ☆25Updated 3 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆22Updated 2 weeks ago
- Irons out wrinkles in noisy coverage data using robust PCA☆15Updated 8 months ago
- Filtering of PDX samples for mouse derived reads☆28Updated last week
- Testing a neutral evolution model on cancer sequencing data☆10Updated 4 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 6 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 9 months ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago