vanallenlab / facets
Implementation of FACETS for Terra
☆12Updated 2 years ago
Alternatives and similar repositories for facets:
Users that are interested in facets are comparing it to the libraries listed below
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆20Updated 3 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆19Updated 3 months ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated last month
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 5 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆15Updated last year
- Testing a neutral evolution model on cancer sequencing data☆10Updated 4 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Updated 4 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆16Updated 5 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 7 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Updated 2 years ago
- DriverPower☆26Updated last month
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated 2 weeks ago
- Quantifying copy number signatures from absolute copy number profiles☆23Updated 3 weeks ago
- SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions☆11Updated 9 months ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- CNV analysis workflow code for the manuscript☆13Updated 4 years ago
- ☆10Updated 4 years ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆12Updated 2 weeks ago
- Pairwise Hierarchical Model☆17Updated 2 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆19Updated 5 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated 9 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ☆11Updated 9 months ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 7 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 6 months ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 5 years ago
- GLASS consortium☆13Updated 2 years ago