☆16Jun 22, 2022Updated 4 years ago
Alternatives and similar repositories for fitclone
Users that are interested in fitclone are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PROGENY Python implementation☆12Apr 5, 2022Updated 4 years ago
- Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data☆14Dec 24, 2023Updated 2 years ago
- Method used in the study on germline mutation rate estimation in 68 species of vertebrates.☆17Oct 11, 2021Updated 4 years ago
- LongSom tool for long-reads☆12May 20, 2025Updated last year
- Bio++ Phylogenetic Library☆18Apr 4, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 3 years ago
- ☆11Apr 25, 2024Updated 2 years ago
- ☆19Jul 31, 2021Updated 5 years ago
- Latent spaces for single cells☆20Oct 31, 2023Updated 2 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆23Jul 28, 2025Updated last year
- Phylogenetic inference using Stan☆24Mar 6, 2025Updated last year
- FRACTAL: framework for distributed computing to trace large accurate lineages☆24Sep 6, 2022Updated 3 years ago
- Package to Score Sequences using Rule Set 3☆17Nov 10, 2025Updated 9 months ago
- Seamlessly integrate R packages into Python.☆21Apr 12, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Probabilistic Inference of Molecular Evolution☆10Sep 6, 2021Updated 4 years ago
- A deme-based, spatially explicit model of intra-tumour population genetics☆21Jan 28, 2025Updated last year
- Toolkit for single-cell copy number analysis☆35Dec 15, 2025Updated 7 months ago
- ☆12Apr 26, 2020Updated 6 years ago
- Extracting mutational signatures via LASSO. The manuscript of the method is published on PLOS Computational Biology and available at: htt…☆11Apr 7, 2026Updated 4 months ago
- scRNA-seq analysis beyond gene annotations using transcriptionally active regions (TARs) generated from sequence alignment data☆11Jul 25, 2022Updated 4 years ago
- Advanced steps of the OSCA book☆14Jul 28, 2026Updated 2 weeks ago
- ☆13Sep 24, 2025Updated 10 months ago
- Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.☆14Dec 6, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12Oct 4, 2021Updated 4 years ago
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆13Mar 13, 2022Updated 4 years ago
- ☆12Nov 20, 2023Updated 2 years ago
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 3 years ago
- Repository of the TRanslational ONCOlogy library, which includes various algorithms (such as CAPRESE and CAPRI) and the Pipeline for Canc…☆30Apr 7, 2026Updated 4 months ago
- ☆19Mar 8, 2023Updated 3 years ago
- Bio++ Core Library☆12Jul 7, 2026Updated last month
- extract gene TSS/TES site form gencode/ensembl/gencode database GTF file and export bed format file.☆12Jan 24, 2022Updated 4 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆39Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code for reproducing the paper "Space-Time Continuous PDE Forecasting using Equivariant Neural Fields" (https://arxiv.org/abs/2406.06660)…☆15Nov 18, 2025Updated 8 months ago
- DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data☆33May 1, 2025Updated last year
- interactive phylogenetic tree viewer☆11Jun 26, 2024Updated 2 years ago
- Scripts to generate simulations and plots used in blog posts on genetic and genealogical ancestry gcbias.org/category/genetic-genealogy/ …☆17Dec 2, 2013Updated 12 years ago
- Fits a generalized form of the covarion model that allows different transition rate classes on different portions of a phylogeny by treat…☆15Jul 14, 2026Updated 3 weeks ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆68Jun 30, 2026Updated last month
- The uncompromising Jupyter notebook formatter.☆14Jan 26, 2024Updated 2 years ago