raphael-group / chiselLinks
CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links
☆40Updated 8 months ago
Alternatives and similar repositories for chisel
Users that are interested in chisel are comparing it to the libraries listed below
Sorting:
- Robust Allele Specific Quantification and quality controL☆40Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 8 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆21Updated last year
- An R package for predicting HR deficiency from mutation contexts☆29Updated 5 months ago
- ☆13Updated 7 years ago
- Single-cell copy number calling and event history reconstruction.☆27Updated 7 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated last month
- TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data☆15Updated 6 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆44Updated last week
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last week
- ☆38Updated 4 years ago
- Enhanced version of the FastQTL QTL mapper☆67Updated 2 years ago
- Irons out wrinkles in noisy coverage data using robust PCA☆15Updated 2 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- ☆38Updated 5 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 6 months ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated 3 months ago
- chia pet analysis software☆25Updated 6 years ago