Alternatives and similar repositories for DNAscanv2

Users that are interested in DNAscanv2 are comparing it to the libraries listed below

• shahcompbio / wgs
  Whole genome workflows
  ☆12Updated last year
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆20Updated 3 years ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆24Updated last month
• daewoooo / StrandPhaseR
  R Package for phasing of single cell Strand-seq data
  ☆10Updated 11 months ago
• MarioniLab / sarlacc
  The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…
  ☆15Updated 6 years ago
• NCBI-Hackathons / HLAClustRView
  R package specialized in HLA typing clustering and visualization based on specific similarity metrics
  ☆14Updated 6 years ago
• ajank / balancer-paper
  Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…
  ☆10Updated 6 years ago
• zhongzhd / ont_m6a_detection
  ☆10Updated 9 months ago
• Gregor-Mendel-Institute / bookend
  End-guided RNA assembler
  ☆15Updated last month
• ComparativeGenomicsToolkit / mafTools
  Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
  ☆11Updated 5 months ago
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• yjx1217 / NanoTrans
  An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data
  ☆14Updated 7 months ago
• gagneurlab / splicemap
  ☆23Updated 5 months ago
• AmpliconSuite / AmpliconReconstructorOM
  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
  ☆19Updated 2 years ago
• WGLab / AmpBinner
  A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data
  ☆10Updated last year
• veltenlab / PrimerDesign
  Package to design primers for MutaSeq and related methods
  ☆11Updated 4 years ago
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆20Updated last week
• jfoox / abrfngs2
  Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility
  ☆19Updated 4 years ago
• mcfrith / dnarrange
  ☆16Updated 11 months ago
• morisUtokyo / uTR
  Detect key Units in mosaic Tandem Repeats from representative reads from the same locus
  ☆11Updated 2 years ago
• UMCUGenetics / COLO829_somaticSV
  Scripts and files used in the generation of the COLO829 somatic SV truthset.
  ☆13Updated 3 years ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆18Updated 5 years ago
• dantaki / CNVplot
  Plot CNV data with a genome viewer in R
  ☆15Updated 8 years ago
• bahlolab / superSTR
  A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.
  ☆18Updated 2 months ago
• heinc1010 / BAMixChecker
  BAMixChecker: A fast and efficient tool for sample matching checkup
  ☆15Updated 3 years ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 4 years ago
• cyang235 / smooth-seq
  A pipeline for Smooth-seq data analysis.
  ☆10Updated 4 years ago
• DecodeGenetics / LRS_SV_sets
  VCF files of SVs using long-read sequencing (LRS).
  ☆22Updated 4 years ago
• ktan8 / nanopore_telomere_basecall
  ☆15Updated 2 years ago
• IrinaVKuznetsova / CirGO
  ☆21Updated last year