Alternatives and similar repositories for DNAscanv2

Users that are interested in DNAscanv2 are comparing it to the libraries listed below

• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated last year
• bahlolab / superSTR
  A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.
  ☆18Updated last month
• gsneha26 / urWGS
  Ultra rapid nanopore whole genome sequencing pipeline, published in https://www.nature.com/articles/s41587-022-01221-5
  ☆19Updated last year
• NCBI-Hackathons / HLAClustRView
  R package specialized in HLA typing clustering and visualization based on specific similarity metrics
  ☆12Updated 5 years ago
• shahcompbio / wgs
  Whole genome workflows
  ☆12Updated 8 months ago
• AmpliconSuite / AmpliconReconstructorOM
  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
  ☆18Updated last year
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 5 years ago
• yuansliu / minirmd
  ☆12Updated 2 years ago
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• WGLab / AmpBinner
  A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data
  ☆10Updated 7 months ago
• gymreklab / STRDenovoTools
  Toolkit for calling and analyzing de novo STR mutations
  ☆14Updated last year
• zhongzhd / ont_m6a_detection
  ☆10Updated 4 months ago
• dantaki / CNVplot
  Plot CNV data with a genome viewer in R
  ☆15Updated 8 years ago
• mcfrith / dnarrange
  ☆16Updated 6 months ago
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆18Updated 2 years ago
• UMCUGenetics / COLO829_somaticSV
  Scripts and files used in the generation of the COLO829 somatic SV truthset.
  ☆13Updated 3 years ago
• Gregor-Mendel-Institute / bookend
  End-guided RNA assembler
  ☆15Updated 3 months ago
• comprna / R2Dtool
  Analyse RNA feature distributions.
  ☆16Updated 7 months ago
• umccr / driver-analysis
  Workflow for driver events identification across cohorts of tumours
  ☆9Updated 11 months ago
• ComparativeGenomicsToolkit / mafTools
  Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
  ☆11Updated last week
• MarioniLab / sarlacc
  The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…
  ☆13Updated 6 years ago
• PacificBiosciences / hg002-ccs
  ☆15Updated 3 years ago
• bio-ontology-research-group / DeepSVP
  Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity
  ☆16Updated 3 years ago
• IrinaVKuznetsova / CirGO
  ☆21Updated last year
• gagneurlab / splicemap
  ☆21Updated 9 months ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆18Updated this week
• daewoooo / StrandPhaseR
  R Package for phasing of single cell Strand-seq data
  ☆10Updated 6 months ago
• jfoox / abrfngs2
  Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility
  ☆19Updated 3 years ago
• CCICB / introme
  Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation
  ☆21Updated 3 months ago