Implementation of ToL genome assembly workflows
☆33Aug 7, 2026Updated this week
Alternatives and similar repositories for genomeassembly
Users that are interested in genomeassembly are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a GFA toolkit☆13Oct 4, 2024Updated last year
- OpenGL Powered Pretext Contact Map Viewer☆63Jul 17, 2026Updated 3 weeks ago
- Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.☆18Updated this week
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated 2 years ago
- Pipelines for the production of Treeval data☆31Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- FastK based version of Merqury☆33Jan 19, 2026Updated 6 months ago
- A organelle de novo genome assembly toolkit☆82Feb 22, 2025Updated last year
- Minimizer-based assembly scaffolding and mapping using long reads☆54Apr 1, 2026Updated 4 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆114Jul 23, 2024Updated 2 years ago
- Compare the quality of multiple genomes, along with their annotations.☆24Updated this week
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 11 months ago
- k-mer based assembly evaluation☆351Jul 6, 2026Updated last month
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆26Updated this week
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆38Apr 7, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Diploid genome assembly analysis tools☆14Sep 19, 2024Updated last year
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆30Apr 11, 2025Updated last year
- List of genome assembly tools☆97Aug 1, 2026Updated last week
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆68May 26, 2026Updated 2 months ago
- Synteny Mapping and Analysis Program☆30Jul 22, 2026Updated 2 weeks ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 3 months ago
- haplotypic duplication identification tool☆294Oct 30, 2025Updated 9 months ago
- Importing and manipulating Hi-C data in R☆12Apr 29, 2026Updated 3 months ago
- GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data☆11Feb 22, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R package to draw syntenic plots in 3 different styles☆46Feb 2, 2026Updated 6 months ago
- starfish: a modular toolkit for giant mobile element annotation☆41Dec 12, 2024Updated last year
- source code for EVM☆126Nov 29, 2024Updated last year
- High performance multiplexed user fuse mounting☆20Jun 19, 2026Updated last month
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 3 months ago
- Yet another Hi-C scaffolding tool☆181Nov 4, 2024Updated last year
- A fast K-mer counter for high-fidelity shotgun datasets☆146Jan 19, 2026Updated 6 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆62Oct 27, 2023Updated 2 years ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 4 months ago
- A Nextflow pipeline for running synteny analysis.☆20Aug 2, 2026Updated last week
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 6 years ago
- The ERGA Assembly Reports repository 👂☆16Updated this week
- ☆17Jun 15, 2026Updated last month
- ☆31Mar 27, 2024Updated 2 years ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆186Jul 30, 2026Updated last week