sanger-tol / genomeassemblyLinks
Implementation of ToL genome assembly workflows
☆20Updated 2 weeks ago
Alternatives and similar repositories for genomeassembly
Users that are interested in genomeassembly are comparing it to the libraries listed below
Sorting:
- Improved Phased Assembler☆28Updated 3 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated last week
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆27Updated 6 months ago
- ☆27Updated last year
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated 2 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 6 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Convert HAL to VG☆22Updated 10 months ago
- Find Unique genomic Regions☆30Updated 3 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- Reference bias measuring toolkit☆18Updated 2 months ago
- ☆25Updated 10 months ago
- Computational Pangenomics☆17Updated 3 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 8 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 7 months ago
- ☆17Updated last year
- Consensus genome annotation using OMA☆24Updated this week
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- A Nextflow pipeline for running synteny analysis.☆15Updated last week
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- ☆35Updated last year
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated 2 years ago
- ☆24Updated 6 months ago
- Yet another Hi-C scaffolding tool☆20Updated 8 months ago
- Kmer Analysis of Pileups for Genotyping☆30Updated this week
- ☆20Updated 3 years ago