sanger-tol / genomeassembly
Implementation of ToL genome assembly workflows
☆20Updated this week
Related projects ⓘ
Alternatives and complementary repositories for genomeassembly
- Improved Phased Assembler☆28Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆33Updated last week
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- implicit pangenome graph☆42Updated this week
- Convert HAL to VG☆21Updated 2 months ago
- a broadly applicable tool for automated gene identification and retrieval☆28Updated 4 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last week
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆31Updated 3 weeks ago
- assembly evaluation tool☆34Updated 2 years ago
- Statistics and analysis for variation graphs☆31Updated 3 weeks ago
- A Nextflow pipeline for running synteny analysis.☆12Updated last week
- PoSeiDon: positive selection detection and recombination analysis pipeline☆35Updated last week
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆30Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆24Updated 3 months ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆44Updated last year
- ☆24Updated last year
- Correcting errors in noisy long reads using variation graphs☆51Updated last year
- scripts to parse and analyse MCScanX collinearity output☆29Updated 4 years ago
- ☆32Updated 8 months ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- ☆23Updated 9 months ago
- ☆32Updated 3 years ago
- Ancient microbiome snakemake workflow☆21Updated 4 months ago
- genomic alignment similarity search tool☆19Updated 5 months ago
- ☆40Updated this week
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆27Updated this week
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- ☆18Updated 2 months ago