Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.
☆17Jun 4, 2026Updated 3 weeks ago
Alternatives and similar repositories for readmapping
Users that are interested in readmapping are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.☆16Updated this week
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆26Jun 10, 2026Updated 3 weeks ago
- Nextflow DSL2 pipeline to call variants on long read alignment.☆11Jun 13, 2026Updated 2 weeks ago
- Implementation of ToL genome assembly workflows☆32May 11, 2026Updated last month
- ☆15Feb 10, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- High performance multiplexed user fuse mounting☆20Jun 19, 2026Updated last week
- Host depletion optimised for clinical metagenomic sequencing applications☆18May 18, 2026Updated last month
- Web based viewer for small to medium GFA format files, similar to Bandage☆13Jun 19, 2026Updated last week
- A Nextflow pipeline for running synteny analysis.☆17Updated this week
- ☆27Nov 14, 2025Updated 7 months ago
- An assembly workflow for analysing data in the Earth Biogenome Project pilot project.☆19May 19, 2026Updated last month
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆65Jan 22, 2026Updated 5 months ago
- Multiple sequence alignment browser☆11Dec 12, 2022Updated 3 years ago
- Extract subsets of ONT (Nanopore) reads based on time☆24Sep 12, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Nextflow pipeline for evaluating assembly quality☆40Nov 9, 2025Updated 7 months ago
- A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq☆25Apr 30, 2026Updated 2 months ago
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated 5 months ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Apr 8, 2024Updated 2 years ago
- ☆10Apr 16, 2025Updated last year
- Rapid discovery of reciprocal best blast pairs.☆10Nov 9, 2024Updated last year
- Population-scale detection of novel sequence insertions☆28Aug 16, 2022Updated 3 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆56Oct 24, 2025Updated 8 months ago
- Convert vcf in parquet☆32Jan 23, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- SV genotyper for long reads with a variation graph☆16Apr 15, 2026Updated 2 months ago
- This repository contains python classes and functions to quickly create a profiling tool for pathogen NGS data☆12Jun 9, 2026Updated 3 weeks ago
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- A tool to detect acquired AMR genes directly from long read sequencing data.☆28Jan 31, 2026Updated 5 months ago
- AMR/VF LGT focused bacterial genomics analysis workflow☆28Feb 19, 2026Updated 4 months ago
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆18Apr 1, 2026Updated 3 months ago
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆28May 7, 2026Updated last month
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- Interactive quality assessment of genome assemblies☆122Mar 18, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- assembly evaluation tool☆35May 11, 2022Updated 4 years ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- ☆27Mar 26, 2024Updated 2 years ago
- Sequencing analysis pipeline☆15Dec 12, 2025Updated 6 months ago
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated last year
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 11 years ago
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago