Alternatives and similar repositories for readmapping

Users that are interested in readmapping are comparing it to the libraries listed below

• sanger-tol / genomenote
  Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…
  ☆26Updated this week
• sanger-tol / blobtoolkit
  Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.
  ☆13Updated this week
• nf-core / hgtseq
  A pipeline to investigate horizontal gene transfer from NGS data
  ☆26Updated last month
• mkpython3 / Mutation-Simulator
  A tool for simulating random mutations in any genome
  ☆42Updated last year
• nf-core / detaxizer
  A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…
  ☆20Updated last week
• JustinChu / ntsm
  This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…
  ☆29Updated 7 months ago
• jonas-fuchs / varVAMP
  Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
  ☆41Updated last month
• Plant-Food-Research-Open / genepal
  A Nextflow pipeline for genome and pan-genome annotation
  ☆14Updated 3 weeks ago
• rega-cev / virulign
  VIRULIGN: fast codon-correct alignment and annotation of viral genomes
  ☆35Updated 4 years ago
• fmalmeida / MpGAP
  Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
  ☆61Updated 10 months ago
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆52Updated last year
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆52Updated 3 months ago
• Eco-Flow / synteny
  A Nextflow pipeline for running synteny analysis.
  ☆15Updated last month
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆41Updated 3 weeks ago
• bluenote-1577 / devider
  Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs
  ☆25Updated 8 months ago
• theiagen / public_health_bacterial_genomics
  ☆26Updated last year
• broadinstitute / GATK-for-Microbes
  ☆28Updated 3 years ago
• SouthGreenPlatform / panache
  Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…
  ☆45Updated 2 years ago
• nf-core / bactmap
  A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
  ☆56Updated last week
• kcleal / pywfa
  Python wrapper for wavefront alignment using WFA2-lib
  ☆35Updated 8 months ago
• JensUweUlrich / ReadBouncer
  Fast and scalable nanopore adaptive sampling
  ☆34Updated 2 years ago
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆38Updated 3 months ago
• czbiohub-sf / sc2-illumina-pipeline
  Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub
  ☆25Updated 3 years ago
• iqbal-lab-org / varifier
  Variant call verification
  ☆16Updated 2 months ago
• Psy-Fer / blue-crab
  lossless nanopore pod5 <=> s/blow5 file conversion
  ☆40Updated this week
• pierrepeterlongo / back_to_sequences
  ☆42Updated this week
• nf-core / genomeassembler
  Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads
  ☆26Updated last week
• dayzerodx / counterr
  ☆31Updated last year
• HaploConduct / HaploConduct
  Haplotype-aware genome assembly toolkit
  ☆29Updated 5 years ago