Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.
☆20Oct 27, 2026Updated this week
Alternatives and similar repositories for readmapping
Users that are interested in readmapping are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆27Oct 23, 2026Updated last week
- Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.☆18Oct 23, 2026Updated last week
- ☆16Jul 24, 2026Updated 3 months ago
- Nextflow DSL2 pipeline to call variants on long read alignment.☆11Updated this week
- A Nextflow pipeline for the production of genome assemblies from long reads and Hi-C data for the Tree of Life project☆42Oct 23, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An assembly workflow for analysing data in the Earth Biogenome Project pilot project.☆19Sep 24, 2026Updated last month
- High performance multiplexed user fuse mounting☆20Sep 25, 2026Updated last month
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Updated this week
- A Nextflow pipeline for running synteny analysis.☆20Aug 2, 2026Updated 2 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 3 months ago
- Web based viewer for small to medium GFA format files, similar to Bandage☆13Jun 19, 2026Updated 4 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆38Apr 23, 2025Updated last year
- Blazingly fast, streaming duplicate detection for NGS data☆22Oct 22, 2026Updated last week
- VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing☆10Sep 8, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- software to identify primers that can distinguish genomes☆20Aug 31, 2026Updated last month
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆66Jan 22, 2026Updated 9 months ago
- Multiple sequence alignment browser☆12Dec 12, 2022Updated 3 years ago
- ☆10Apr 16, 2025Updated last year
- A Nextflow pipeline for genome and pan-genome annotation☆17Feb 22, 2026Updated 8 months ago
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Oct 8, 2026Updated 3 weeks ago
- The ERGA Assembly Reports repository 👂☆16Updated this week
- Rapid discovery of reciprocal best blast pairs.☆10Nov 9, 2024Updated last year
- THRESHER is a framework that replaces fixed cutoffs with data-driven phylothresholds - the SNP thresholds corrected for phylogenetic topo…☆14Oct 17, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A genome assembly assessment pipeline.☆39Jun 5, 2026Updated 4 months ago
- Extract subsets of ONT (Nanopore) reads based on time☆26Sep 12, 2024Updated 2 years ago
- Population-scale detection of novel sequence insertions☆28Aug 16, 2022Updated 4 years ago
- A eukaryotic genome annotation pipeline☆14Oct 20, 2026Updated last week
- Unzip assembly graphs with Hi-C data and/or long reads.☆29May 7, 2026Updated 5 months ago
- A Nextflow pipeline for evaluating assembly quality☆42Oct 14, 2026Updated 2 weeks ago
- Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification☆14Apr 8, 2024Updated 2 years ago
- Nextflow runs monitoring and organisation UI☆79Sep 20, 2024Updated 2 years ago
- Tool intended to pull out sequences and annotations between insertion sites specified by the user.☆15Apr 10, 2026Updated 6 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A tool to detect acquired AMR genes directly from long read sequencing data.☆32Jan 31, 2026Updated 8 months ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆57Oct 20, 2026Updated last week
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆56Sep 1, 2026Updated last month
- ☆21Sep 28, 2026Updated last month
- Convert vcf in parquet☆32Jan 23, 2025Updated last year
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago