Alternatives and similar repositories for readmapping:

Users that are interested in readmapping are comparing it to the libraries listed below

• sanger-tol / blobtoolkit
  Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.
  ☆11Updated last month
• sanger-tol / genomenote
  Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…
  ☆24Updated last week
• nf-core / hgtseq
  A pipeline to investigate horizontal gene transfer from NGS data
  ☆24Updated last month
• SouthGreenPlatform / panache
  Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…
  ☆44Updated last year
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆36Updated 3 months ago
• cmdcolin / graphgenomeviewer
  Web based viewer for small to medium GFA format files, similar to Bandage
  ☆11Updated 3 weeks ago
• mbhall88 / pafpy
  A lightweight library for working with PAF (Pairwise mApping Format) files
  ☆31Updated 2 years ago
• ComparativeGenomicsToolkit / taffy
  This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files
  ☆24Updated last month
• tlemane / kmdiff
  Differential k-mer analysis
  ☆34Updated 11 months ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆22Updated 9 months ago
• iqbal-lab-org / varifier
  Variant call verification
  ☆15Updated this week
• nf-core / genomeassembler
  ☆16Updated this week
• sanger-tol / genomeassembly
  Implementation of ToL genome assembly workflows
  ☆20Updated 2 months ago
• kcleal / pywfa
  Python wrapper for wavefront alignment using WFA2-lib
  ☆35Updated 2 months ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆33Updated 3 years ago
• Psy-Fer / blue-crab
  crab go snap snap
  ☆35Updated last month
• gbouras13 / pypolca
  Standalone Python re-implementation of the POLCA polisher from MaSuRCA
  ☆29Updated 4 months ago
• Adamtaranto / blast-besties
  Rapid discovery of reciprocal best blast pairs.
  ☆10Updated 2 months ago
• JensUweUlrich / Taxor
  Fast and space-efficient taxonomic classification of long reads
  ☆43Updated 2 months ago
• karel-brinda / MiniPhy
  Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]
  ☆21Updated last month
• sourmash-bio / sourmash_plugin_branchwater
  fast, multithreaded sourmash operations: search, compare, and gather.
  ☆21Updated this week
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆21Updated 5 months ago
• rpetit3 / fastq-scan
  Output FASTQ summary statistics in JSON format
  ☆29Updated 2 years ago
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆47Updated last month
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆27Updated 2 years ago
• mkirsche / Grafter
  Scaffolding with Ultralong Reads
  ☆15Updated 4 years ago
• thegenemyers / GENESCOPE.FK
  A derivative of GenomeScope2.0 modified to work with FastK
  ☆9Updated last year
• dfguan / asset
  assembly evaluation tool
  ☆34Updated 2 years ago
• pierrepeterlongo / back_to_sequences
  ☆41Updated last month