sanger-tol / genomenote
This Nextflow DSL2 pipeline takes aligned HiC reads, creates contact maps and a table of statistics.
☆22Updated last week
Related projects: ⓘ
- Nextflow pipeline for BlobToolKit for Sanger ToL production suite☆11Updated this week
- A pipeline to investigate horizontal gene transfer from NGS data☆21Updated 4 months ago
- A Nextflow pipeline for running synteny analysis.☆12Updated last week
- Implementation of ToL genome assembly workflows☆18Updated this week
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆23Updated 2 months ago
- WDL workflows for variant calling and assembly using ONT☆28Updated 2 months ago
- ☆13Updated 3 weeks ago
- Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.☆8Updated this week
- A Nextflow workflow to generate lift over files for any pair of genomes☆53Updated 2 weeks ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆18Updated last week
- Transfer coordinates across genomes☆23Updated 3 months ago
- ☆13Updated last year
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆30Updated last week
- A battery of methylation tools for PacBio HiFi reads☆26Updated 3 weeks ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 2 years ago
- a lexicographically-based GTF/GFF sorter☆28Updated last month
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆34Updated last year
- A module for improving the insertion sequences of structural variant calls☆28Updated 3 years ago
- Automated Detection and Qualification of Differential Methylation☆10Updated 10 months ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆41Updated last month
- Population-wide Deletion Calling☆34Updated 2 weeks ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆22Updated 3 months ago
- Structural variant (SV) analysis tools☆36Updated 2 months ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆31Updated 2 years ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆20Updated this week
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 2 years ago
- crab go snap snap☆28Updated 2 weeks ago