sanger-tol / genomenoteLinks
Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is part of the Tree of Life production suite.
☆26Updated this week
Alternatives and similar repositories for genomenote
Users that are interested in genomenote are comparing it to the libraries listed below
Sorting:
- Nextflow DSL2 pipeline to generate data for a BlobToolKit analysis. This workflow is part of the Tree of Life production suite.☆13Updated last week
- Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.☆13Updated last week
- A pipeline to investigate horizontal gene transfer from NGS data☆26Updated 3 months ago
- Implementation of ToL genome assembly workflows☆20Updated last week
- A Nextflow pipeline for running synteny analysis.☆15Updated 3 months ago
- A Nextflow pipeline for genome and pan-genome annotation☆15Updated 2 months ago
- ☆15Updated 2 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆28Updated 3 weeks ago
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 11 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆29Updated last year
- ☆21Updated 8 months ago
- FamDB file format library and utilities☆31Updated 3 weeks ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆38Updated last month
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 4 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 9 months ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆42Updated 3 weeks ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- ☆27Updated 2 years ago
- Rapid discovery of reciprocal best blast pairs.☆10Updated 10 months ago
- Nextflow pipeline designed for rapid onsite QC and variant calling of Oxford Nanopore data (following basecalling and demultiplexing with…☆13Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- A comparative genome scaffolding tool☆16Updated 6 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 9 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆38Updated 2 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 2 months ago
- ☆45Updated last month