rebeccaserramari / polyploid-potato-assemblyLinks
Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspring data"
☆14Updated last year
Alternatives and similar repositories for polyploid-potato-assembly
Users that are interested in polyploid-potato-assembly are comparing it to the libraries listed below
Sorting:
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- SINE annotation tool for plant genomes☆18Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 7 months ago
- parallelLastz: Running Lastz in parallel☆17Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆21Updated 5 months ago
- Construct and Analyze the North American Vitis pangenome☆25Updated last month
- plot genome alignment synteny☆21Updated 5 years ago
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- Tools for haplotype-wise reconstruction of pseudomolecules☆22Updated last month
- COsine-based SImilarity Genotyper using pangenomes☆21Updated this week
- Some components that speed up and reduce resource cost for original ALLHiC☆14Updated 3 months ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Updated 2 months ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated last month
- a fork of the gap-closing pipeline PBJelly☆15Updated 6 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 5 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆14Updated 6 years ago
- Domain based annotation of transposable elements☆20Updated this week
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆23Updated last year
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Updated last year
- The MafFilter genome alignment processor☆19Updated 4 months ago
- ☆27Updated 6 months ago
- Consensus genome annotation using OMA☆26Updated 3 months ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- ☆28Updated last year
- ☆16Updated 2 years ago
- ☆15Updated 3 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 7 years ago