rebeccaserramari / polyploid-potato-assemblyLinks
Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspring data"
☆15Updated last year
Alternatives and similar repositories for polyploid-potato-assembly
Users that are interested in polyploid-potato-assembly are comparing it to the libraries listed below
Sorting:
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆19Updated 2 months ago
- SINE annotation tool for plant genomes☆17Updated last year
- Identification of conserved non-coding sequences in plants☆21Updated 2 months ago
- Construct and Analyze the North American Vitis pangenome☆23Updated last year
- ☆16Updated 2 years ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago
- Set of script for the paper on the cattle graph genome☆13Updated 2 years ago
- Some components that speed up and reduce resource cost for original ALLHiC☆14Updated 3 weeks ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated last week
- Tools for haplotype-wise reconstruction of pseudomolecules☆20Updated 9 months ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 4 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated last year
- ☆20Updated last week
- a fork of the gap-closing pipeline PBJelly☆14Updated 6 years ago
- Domain based annotation of transposable elements☆19Updated 2 months ago
- parallelLastz: Running Lastz in parallel☆16Updated 10 months ago
- plot genome alignment synteny☆21Updated 5 years ago
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆13Updated last year
- The MafFilter genome alignment processor☆19Updated 2 months ago
- TD2☆13Updated last month
- ☆25Updated 10 months ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Updated 9 months ago
- Genome alignment and synteny plots☆30Updated 2 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆27Updated 6 months ago
- Inferring natural selection by comparative population genomic analysis across species☆23Updated last year
- Consensus genome annotation using OMA☆26Updated 3 weeks ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 5 months ago
- T2Tools is a toolset contains several tools for plant T2T assembly, and it is under development.☆14Updated last month