Protein hint generation pipeline for gene finding in eukaryotic genomes
☆61Oct 27, 2023Updated 2 years ago
Alternatives and similar repositories for ProtHint
Users that are interested in ProtHint are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆28Apr 11, 2025Updated 11 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆451Oct 20, 2025Updated 5 months ago
- source code for EVM☆122Nov 29, 2024Updated last year
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Jan 27, 2025Updated last year
- RegCloser is a genome gap-closing tool based on the robust regression approach, which is conceptually applicable to de novo assembly of N…☆15Apr 22, 2024Updated last year
- TSEBRA: Transcript Selector for BRAKER☆49Nov 14, 2025Updated 4 months ago
- A genome completeness evaluation tool based on miniprot☆237Sep 18, 2025Updated 6 months ago
- ☆26Feb 24, 2026Updated last month
- ☆24Dec 15, 2025Updated 3 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆33Jan 3, 2022Updated 4 years ago
- methods for orphan gene prediction paper optimization☆25Dec 24, 2021Updated 4 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆90Nov 23, 2024Updated last year
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Neural network classification of TE☆97Oct 9, 2025Updated 5 months ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- Implementation of ToL genome assembly workflows☆28Updated this week
- Genome annotation with AUGUSTUS☆328Aug 15, 2025Updated 7 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Sep 19, 2024Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆561Feb 14, 2024Updated 2 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆233Sep 6, 2024Updated last year
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆49Mar 10, 2026Updated 2 weeks ago
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆87Mar 14, 2026Updated last week
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated last year
- k-mer based assembly evaluation☆340Jun 28, 2024Updated last year
- Fast genome analysis from unassembled short reads☆317Apr 8, 2024Updated last year
- Version 5 of the CAFE phylogenetics software☆164Mar 16, 2026Updated last week
- A genome assembly assessment pipeline.☆38Nov 20, 2023Updated 2 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 5 years ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆36May 9, 2024Updated last year
- Repeat-aware polishing genomes assembled using HiFi long reads☆98Nov 12, 2025Updated 4 months ago
- The full-length Homology-based R-gene Prediction (HRP) pipeline to comprehensively identify full-length NB-LRR gene models within genome …☆11Jul 27, 2023Updated 2 years ago
- Fast and accurately polish the genome generated by long reads.☆241Jan 9, 2025Updated last year
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆147Updated this week
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆17Oct 6, 2025Updated 5 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆180Dec 1, 2023Updated 2 years ago
- ☆91Dec 3, 2025Updated 3 months ago