Alternatives and similar repositories for ProtHint

Users that are interested in ProtHint are comparing it to the libraries listed below

• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆90Updated this week
• harvardinformatics / GenomeAnnotation
  Best practices and workflow for genome annotation
  ☆79Updated 9 months ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆92Updated last month
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆49Updated 2 months ago
• PacificBiosciences / pbtk
  PacBio BAM toolkit
  ☆49Updated 11 months ago
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆94Updated this week
• rhysf / Synima
  Synteny Imager
  ☆65Updated last month
• abacus-gene / paml-tutorial
  paml documentation and tutorials
  ☆68Updated last month
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆121Updated 2 months ago
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆38Updated 3 months ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆107Updated 3 weeks ago
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆83Updated 3 years ago
• nclark-lab / RERconverge
  Analysis of convergence between organismal traits and DNA/protein sequences
  ☆62Updated last month
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆97Updated 4 months ago
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆67Updated 3 years ago
• rderelle / Broccoli
  orthology assignment using phylogenetic and network analyses
  ☆53Updated 3 weeks ago
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆101Updated 2 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆59Updated 2 years ago
• kiranbandi / synvisio
  SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …
  ☆93Updated 2 months ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated 2 years ago
• SAMtoBAM / MUMandCo
  MUM&Co uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
  ☆76Updated 3 weeks ago
• kjenike / panagram
  ☆68Updated last week
• harta55 / EnTAP
  EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP
  ☆41Updated last year
• xfengnefx / hifiasm-meta
  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
  ☆69Updated 2 months ago
• jeffersonfparil / compare_genomes
  A comparative genomics workflow using Nextflow, conda, Julia and R
  ☆49Updated last year
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆49Updated last week
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆90Updated last year
• jts / assembly_accuracy
  tools for assessing the accuracy of genome assemblies
  ☆35Updated last year
• mapleforest / HaploMerger2
  ☆45Updated 9 years ago
• bcgsc / ntJoin
  🔗Genome assembly scaffolder using minimizer graphs
  ☆85Updated last year