Alternatives and similar repositories for ProtHint:

Users that are interested in ProtHint are comparing it to the libraries listed below

• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆73Updated last week
• harvardinformatics / GenomeAnnotation
  Best practices and workflow for genome annotation
  ☆74Updated last month
• rhysf / Synima
  Synteny Imager
  ☆60Updated 6 months ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 4 months ago
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆92Updated last month
• refresh-bio / kmer-db
  Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…
  ☆86Updated 3 months ago
• rderelle / Broccoli
  orthology assignment using phylogenetic and network analyses
  ☆46Updated 2 weeks ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆38Updated 3 weeks ago
• mourisl / Rcorrector
  Error correction for Illumina RNA-seq reads
  ☆65Updated last year
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆146Updated last month
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆66Updated 2 years ago
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆60Updated 2 years ago
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆52Updated this week
• kiranbandi / synvisio
  SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …
  ☆84Updated last year
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆109Updated 3 months ago
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆97Updated this week
• kjenike / panagram
  ☆61Updated last week
• santiagosnchez / vcf2fasta
  Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file
  ☆49Updated 5 months ago
• DessimozLab / OMArk
  ☆71Updated 2 weeks ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆70Updated 3 years ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆76Updated 2 months ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆69Updated 2 weeks ago
• sheinasim-USDA / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆86Updated 8 months ago
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆30Updated last week
• slt666666 / NLRtracker
  NLR annotation tool
  ☆24Updated last year
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆66Updated 7 years ago
• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆99Updated last week
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆61Updated 3 weeks ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆55Updated 2 years ago
• vgl-hub / gfastats
  A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…
  ☆98Updated 2 weeks ago