Alternatives and similar repositories for wgdi-example:

Users that are interested in wgdi-example are comparing it to the libraries listed below

• lardo / khaper
  ☆27Updated 2 years ago
• LAILAB-CAU / update-Mo17
  ☆24Updated 2 years ago
• YaoZhou89 / WGSc
  ☆15Updated 3 years ago
• Adamtaranto / TRF2GFF
  Convert Tandem Repeat Finder dat file output into gff3 format
  ☆27Updated 4 months ago
• yilinZhang-bio / Watermelon-pangenome
  ☆22Updated last year
• HuiyangYu / HFKReads
  An ultra-fast and efficient tool for high frequency kmer sequencing reads extraction
  ☆19Updated last year
• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 9 months ago
• zhangrengang / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆22Updated 2 months ago
• zhangrengang / SOI
  Robust identification of orthologous Synteny with the Orthology Index
  ☆18Updated last week
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• liushoucheng / SPART
  a Semi-automated pipeline for assembling T2T genome
  ☆16Updated 2 weeks ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆31Updated last year
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆27Updated 3 years ago
• wangziwei08 / LTR-insertion-time-estimation
  ☆15Updated 2 years ago
• Atvar2 / plotHicGenome
  The tools are used for displaying hic signal of genome
  ☆23Updated 4 years ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆19Updated 6 months ago
• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆18Updated last year
• qunjie-zhang / gfanno
  Gene Family Annotation Workflow
  ☆11Updated last year
• yhw320 / PanSyn
  ☆20Updated last year
• NBISweden / TransposonPSI
  TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…
  ☆13Updated 5 years ago
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆17Updated 3 weeks ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆21Updated last year
• jkimlab / DESCHRAMBLER
  ☆23Updated last year
• fanagislab / EndHiC
  EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…
  ☆23Updated 2 years ago
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆29Updated 3 months ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆16Updated last year
• xiekunwhy / kmerDedup
  Reduce genome assembly redundancy using shared mapped k-mer method.
  ☆13Updated last week
• simon19891216 / CentIER
  ☆29Updated 8 months ago
• linyuiz / zgtools
  zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.
  ☆29Updated 3 weeks ago
• JM-SONG / GenomeSyn
  ☆25Updated 3 years ago