a GFA toolkit
☆13Oct 4, 2024Updated last year
Alternatives and similar repositories for gaffer
Users that are interested in gaffer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Dec 9, 2022Updated 3 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆17Updated this week
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated 2 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- 1-code framework: docs, C-library, and tools☆28Aug 14, 2026Updated last month
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year
- ☆19May 10, 2023Updated 3 years ago
- A Nextflow pipeline for the production of genome assemblies from long reads and Hi-C data for the Tree of Life project☆38Sep 11, 2026Updated last week
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 5 years ago
- GBZ file format for pangenome graphs☆46Sep 14, 2026Updated last week
- ONEcode package to replace SAM/BAM, especially for eDNA mapping to everything☆20Aug 17, 2026Updated last month
- Pan-genome Seed Index☆20Jul 3, 2026Updated 2 months ago
- Identification of transposable element families from pangenome polymorphisms☆57Aug 11, 2026Updated last month
- DNA kmer operations for nim☆14Apr 24, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆17May 23, 2026Updated 4 months ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- ☆31Mar 27, 2024Updated 2 years ago
- Align subreads to ccs reads☆14Jun 11, 2025Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆48Aug 28, 2026Updated 3 weeks ago
- ☆29Sep 28, 2024Updated last year
- Static Huffman coding☆10Apr 3, 2017Updated 9 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- A fast K-mer counter for high-fidelity shotgun datasets☆148Jan 19, 2026Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- simple program to rotate a circular sequence to start at a given position or string☆21Jul 9, 2023Updated 3 years ago
- ☆32Dec 16, 2022Updated 3 years ago
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 4 years ago
- Source code for the Shifted Hamming Distance (SHD) filtering mechanism for sequence alignment. Described in the Bioinformatics journal pa…☆36Mar 29, 2020Updated 6 years ago
- maze: match visualizer☆10Oct 11, 2021Updated 4 years ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆15Nov 20, 2023Updated 2 years ago
- efficient alignment of strings to partially ordered string graphs☆33Apr 22, 2026Updated 5 months ago
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MIG is a .Net library providing an integrated solution for developing networked applications and real time web applications☆16Sep 16, 2026Updated last week
- ☆17Jan 5, 2021Updated 5 years ago
- A tool for merging large BWTs☆23Nov 26, 2020Updated 5 years ago
- Add functional variant annotation to MAF file☆11Nov 20, 2024Updated last year
- Scaffolding genomes using synthetic long read clouds☆20Oct 11, 2016Updated 9 years ago
- a string to graph aligner☆41Jul 5, 2016Updated 10 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago