hannesbecher / shiny-k-mers
Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)
☆11Updated last month
Related projects: ⓘ
- ☆17Updated 2 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆47Updated last month
- A package for population structure inference from RAD-seq data☆31Updated 3 years ago
- A genome-wide IM blockwise likelihood estimation toolkit☆14Updated 2 months ago
- Sampling and inference of genealogies with recombination☆22Updated last week
- HybSeq Target Capture of 353 Protein Coding Genes in Any Angiosperm☆16Updated last year
- spruceup☆19Updated last month
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated last month
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 6 years ago
- Code and binaries related to processing haplotagging data☆13Updated 2 years ago
- ☆18Updated last month
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 3 years ago
- ☆25Updated last year
- ☆17Updated 6 years ago
- Genetic Map Comparison☆20Updated last year
- Estimating repeat spectra and genome length from low-coverage genome skims☆11Updated last year
- ☆13Updated 3 weeks ago
- A tool to identify and annotate homoplasies on a phylogeny and sequence alignment☆19Updated 3 years ago
- A tool to root phylogenies☆19Updated 2 weeks ago
- Software for detecting introgression using supervised machine learning☆18Updated last year
- ASTRAL for PaRalogs and Orthologs☆19Updated 2 years ago
- Infer demographic history with the Moran model☆47Updated 5 months ago
- ☆40Updated 9 months ago
- Scripts for population genetics analysis☆19Updated last year
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆17Updated last year
- A procedure to find Fst outliers based on an inferred distribution of neutral Fst☆18Updated 5 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- An R package to detect selection in biological pathways☆14Updated 8 months ago
- Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clin…☆16Updated 2 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆28Updated 6 years ago