hannesbecher / shiny-k-mers
Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraploids (allo and auto)
☆13Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for shiny-k-mers
- ☆18Updated last month
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆47Updated 3 months ago
- A genome-wide IM blockwise likelihood estimation toolkit☆15Updated 5 months ago
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆10Updated last year
- Sampling and inference of genealogies with recombination☆25Updated 2 months ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆12Updated 2 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆17Updated last year
- Estimating repeat spectra and genome length from low-coverage genome skims☆11Updated last year
- Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.☆15Updated 7 months ago
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆24Updated this week
- Code and binaries related to processing haplotagging data☆13Updated 2 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆30Updated 2 years ago
- ☆17Updated 6 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 6 years ago
- ☆19Updated 3 months ago
- Software for detecting introgression using supervised machine learning☆18Updated 2 years ago
- ☆10Updated 9 months ago
- Reference genome quality scores☆19Updated 3 years ago
- ☆11Updated 5 years ago
- Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples☆13Updated 5 years ago
- Genetic Map Comparison☆20Updated 2 years ago
- R-package: Calculation of haplotype blocks and libraries☆28Updated 8 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆31Updated last month
- Tool for fully-automated inference of species trees from raw genome assemblies☆20Updated last week
- Codon-Aware Multiple Sequence Alignments☆19Updated last week
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated last year
- Analyze and simulate Pool-Seq time series data☆15Updated 2 years ago
- ASTRAL for PaRalogs and Orthologs☆19Updated 2 years ago
- Genetic maps in autopolyploids☆26Updated 8 months ago
- GONE: Scripts, programs and an example data set☆43Updated 10 months ago