bcgsc / ntLinkLinks
Minimizer-based assembly scaffolding and mapping using long reads
☆43Updated 10 months ago
Alternatives and similar repositories for ntLink
Users that are interested in ntLink are comparing it to the libraries listed below
Sorting:
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 2 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆41Updated 4 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last month
- Correcting errors in noisy long reads using variation graphs☆52Updated 2 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆39Updated 10 months ago
- Differential k-mer analysis☆36Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37Updated 3 months ago
- ☆44Updated last month
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 5 months ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆27Updated 2 years ago
- ☆26Updated last year
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 6 years ago
- ☆42Updated 3 weeks ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆35Updated last month
- transposable element typing pipeline☆19Updated last year
- SV calling for diploid assemblies☆28Updated last year
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated 2 years ago
- ☆37Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 8 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago