bcgsc / ntLink

Related projects ⓘ

Alternatives and complementary repositories for ntLink

• rhysf / Diamond2GO
  ☆19Updated 3 months ago
• ERGA-consortium / pipelines
  ☆14Updated 2 weeks ago
• wdecoster / phasius
  ☆13Updated 2 months ago
• sanger-tol / PretextMap
  Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.
  ☆20Updated 2 years ago
• lemene / PECAT
  PECAT, a phased error correct and assembly tool
  ☆39Updated last week
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆36Updated last year
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆33Updated 3 years ago
• nf-core / genomeannotator
  Pipeline for the identification of (coding) gene structures in draft genomes.
  ☆18Updated 6 months ago
• mahulchak / mscaffolder
  A comparative genome scaffolding tool
  ☆17Updated 6 years ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 2 years ago
• bcgsc / physlr
  Construct a Physical Map from Linked Reads
  ☆18Updated 7 months ago
• AndreaGuarracino / paf2chain
  convert PAF format to CHAIN format
  ☆26Updated 6 months ago
• kensung-lab / hypo-assembler
  ☆37Updated 2 weeks ago
• aesheppard / TETyper
  transposable element typing pipeline
  ☆16Updated 8 months ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆20Updated 3 years ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆34Updated last year
• VGP / vgp-tools
  ☆28Updated last year
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆33Updated 4 years ago
• CMU-SAFARI / FastRemap
  FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…
  ☆26Updated 2 years ago
• pangenome / HPRCyear1v2genbank
  building a human pangenome from the HPRCy1v2 genbank accessioned assemblies
  ☆14Updated last year
• Adamtaranto / blast-besties
  Rapid discovery of reciprocal best blast pairs.
  ☆10Updated last week
• dubssieg / pancat
  Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
  ☆31Updated last month
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆23Updated 5 months ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆21Updated 3 months ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated this week
• pdimens / harpy
  Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.
  ☆13Updated this week
• pangenome / pgge
  the pangenome graph evaluator
  ☆23Updated 3 years ago
• photocyte / plot_mitochondrial_genome_with_CIRCOS
  ☆15Updated 6 years ago
• fritzsedlazeck / sge_mummer
  Scripts to split reference and run mummer in parallel on an SGE cluster
  ☆11Updated 8 years ago
• dvdylus / read2tree
  ☆20Updated 2 years ago