Alternatives and similar repositories for SyMAP

Users that are interested in SyMAP are comparing it to the libraries listed below

• gatech-genemark / GeneMark-ETP
  GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology
  ☆23Updated 3 months ago
• CarineRey / pcoc
  Convergent substitution detection tool based on the PCOC model
  ☆31Updated 3 years ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 4 years ago
• groupschoof / AHRD
  High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
  ☆66Updated last year
• PalMuc / TransPi
  TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
  ☆27Updated 3 years ago
• clemgoub / TE-Aid
  Annotation helper tool for the manual curation of transposable element consensus sequences
  ☆49Updated 4 months ago
• guyleonard / genomics_adventure
  Workshop on Genomics - Genomics Adventure
  ☆42Updated last month
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆21Updated 8 months ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆43Updated last week
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆30Updated last year
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆35Updated this week
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆26Updated 2 years ago
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 3 years ago
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆60Updated 6 months ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated last week
• reubwn / collinearity
  scripts to parse and analyse MCScanX collinearity output
  ☆32Updated 5 years ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆36Updated 11 months ago
• MatteoSchiavinato / all2vcf
  Toolkit to convert the output of common variant calling programs to VCF
  ☆23Updated 2 years ago
• bpucker / MGSE
  Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequenc…
  ☆35Updated last week
• fanagislab / EndHiC
  EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…
  ☆23Updated 2 years ago
• vgteam / giraffe-sv-paper
  ☆42Updated last year
• josieparis / gatk-snp-calling
  Full GATK SNP calling pipeline
  ☆21Updated 2 years ago
• GonzalezLab / MCHelper
  MCHelper: An automatic tool to curate transposable element libraries
  ☆36Updated 2 weeks ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• lardo / khaper
  ☆28Updated 3 years ago
• baozg / phased-assembly-check
  ☆30Updated 6 months ago
• hillerlab / make_lastz_chains
  Portable solution to generate genome alignment chains using lastz
  ☆57Updated last month
• rderelle / Broccoli
  orthology assignment using phylogenetic and network analyses
  ☆45Updated 4 months ago
• HuffordLab / GenomeQC
  ☆32Updated 4 years ago
• dePamphilis / PlantTribes
  PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics
  ☆35Updated 2 years ago