csoderlund / SyMAPLinks
Synteny Mapping and Analysis Program
☆27Updated last week
Alternatives and similar repositories for SyMAP
Users that are interested in SyMAP are comparing it to the libraries listed below
Sorting:
- Yet another Hi-C scaffolding tool☆21Updated 10 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- ☆42Updated last year
- perSVade: personalized Structural Variation detection☆40Updated last month
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 8 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- ☆32Updated last year
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- Genome Annotation Pipeline☆36Updated last year
- An R package to infer and analyze synteny networks from protein sequences☆30Updated last month
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- ☆27Updated 2 years ago
- ☆31Updated 5 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆21Updated last year
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Updated 2 years ago
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆23Updated 4 months ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- ☆26Updated 4 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆27Updated 3 weeks ago
- Computational Analysis of Gene Expression Evolution☆43Updated last week
- Multi-genome synteny block visualization tool☆43Updated 7 months ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- ☆30Updated 7 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Updated 5 years ago
- ☆28Updated 3 years ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- A Nextflow pipeline for evaluating assembly quality☆37Updated last week
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 11 months ago