csoderlund / SyMAPLinks
Synteny Mapping and Analysis Program
☆30Updated this week
Alternatives and similar repositories for SyMAP
Users that are interested in SyMAP are comparing it to the libraries listed below
Sorting:
- Yet another Hi-C scaffolding tool☆22Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 4 years ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆33Updated 5 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 4 years ago
- ☆29Updated 2 years ago
- Genome Annotation Pipeline☆41Updated last year
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆12Updated 2 months ago
- methods for orphan gene prediction paper optimization☆25Updated 4 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆32Updated 4 years ago
- ☆33Updated last year
- Add multiple thread function for genome comparison☆16Updated 4 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆46Updated 2 years ago
- ☆26Updated 4 years ago
- ☆44Updated last year
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆26Updated 9 months ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Updated 6 years ago
- This is code for running Orthofinder -> PAML☆12Updated 9 years ago
- MCHelper: An automatic tool to curate transposable element libraries☆45Updated 6 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 4 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Updated 5 years ago
- ☆29Updated 3 years ago
- ☆35Updated 5 years ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Updated last year
- ☆24Updated last month
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆28Updated 4 years ago
- ☆32Updated last year
- ☆21Updated 6 years ago
- ☆29Updated 2 years ago