csoderlund / SyMAP

Related projects ⓘ

Alternatives and complementary repositories for SyMAP

• happykhan / BRIG
  BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…
  ☆29Updated 5 years ago
• paulstothard / cgview
  CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
  ☆42Updated 4 months ago
• rbouckaert / DensiTree
  Automatically exported from code.google.com/p/densitree
  ☆26Updated 2 months ago
• mcfrith / last-genome-alignments
  ☆50Updated last year
• eead-csic-compbio / allopolyploids
  PhyloSD: Phylogenomic Subgenome Detection pipeline
  ☆11Updated 2 years ago
• guyleonard / genomics_adventure
  Workshop on Genomics - Genomics Adventure
  ☆33Updated 10 months ago
• dePamphilis / PlantTribes
  PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics
  ☆34Updated last year
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆26Updated 2 weeks ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 3 years ago
• NGSEP / NGSEPcore
  NGSEP is an integrated framework for analysis of high throughput sequencing (HTS) reads. The main functionality of NGSEP is the variants …
  ☆47Updated last week
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆28Updated 7 months ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆53Updated last month
• evolgeniusteam / EvolviewDocumentation
  Documentation for Evolview
  ☆26Updated 2 years ago
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 2 years ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆37Updated 5 months ago
• tobiasrausch / vc
  A tutorial on structural variant calling for short read sequencing data
  ☆26Updated 3 weeks ago
• tanghaibao / allhic
  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
  ☆59Updated 3 years ago
• hillerlab / CESAR2.0
  ☆28Updated last year
• kensung-lab / hypo-assembler
  ☆37Updated 2 weeks ago
• clemgoub / TE-Aid
  Annotation helper tool for the manual curation of transposable element consensus sequences
  ☆45Updated 5 months ago
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆36Updated last year
• sjspielman / phyphy
  Python HyPhy: Facilitating HyPhy execution and parsing
  ☆21Updated 2 years ago
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆56Updated 2 years ago
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆31Updated 5 years ago
• LKremer / showTree
  showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
  ☆30Updated 5 years ago
• rhysf / Diamond2GO
  ☆19Updated 3 months ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆32Updated 3 months ago
• steineggerlab / ufcg
  UFCG: Universal Fungal Core Genes
  ☆32Updated last month
• reubwn / collinearity
  scripts to parse and analyse MCScanX collinearity output
  ☆29Updated 4 years ago
• sestaton / Transposome
  A toolkit for annotation of transposable element families from unassembled sequence reads
  ☆31Updated last year