veg / hyphy-analyses
HyPhy standalone analyses
☆40Updated this week
Alternatives and similar repositories for hyphy-analyses:
Users that are interested in hyphy-analyses are comparing it to the libraries listed below
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated last month
- ☆32Updated 4 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated last week
- Conditional Reciprocal Best Blast☆42Updated 8 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆38Updated 2 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆40Updated last week
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆54Updated last year
- Automatic evaluation of HGTs☆27Updated last month
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Computational Analysis of Gene Expression Evolution☆40Updated last week
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Synteny Imager☆61Updated 7 months ago
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Likelihood-based Selective Sweep Detection☆37Updated last year
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆28Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆35Updated 11 months ago
- This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MA…☆34Updated last year
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated 9 months ago
- ☆24Updated last month
- ☆31Updated 8 months ago
- Multi-genome synteny block visualization tool☆32Updated 2 months ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 6 months ago