Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
☆187Jul 30, 2026Updated last month
Alternatives and similar repositories for redundans
Users that are interested in redundans are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- haplotypic duplication identification tool☆294Oct 30, 2025Updated 10 months ago
- Fast genome analysis from unassembled short reads☆325Apr 8, 2024Updated 2 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆246Sep 6, 2024Updated last year
- k-mer based assembly evaluation☆353Jul 6, 2026Updated last month
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆213Nov 18, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆299May 28, 2026Updated 3 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆186Jul 21, 2026Updated last month
- ☆46May 1, 2026Updated 4 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆200May 11, 2025Updated last year
- Chromosome-level scaffolding using multiple references☆170Sep 8, 2024Updated last year
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 3 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Feb 14, 2024Updated 2 years ago
- software tools for haplotype assembly from sequence data☆233Feb 9, 2025Updated last year
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆220Jun 30, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Reference-free profiling of polyploid genomes☆146Oct 2, 2025Updated 11 months ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Jun 4, 2026Updated 3 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- Synteny and Rearrangement Identifier☆485Jul 1, 2026Updated 2 months ago
- ☆278Jun 26, 2025Updated last year
- Fast and accurate de novo assembler for long reads☆406May 10, 2024Updated 2 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆216Aug 21, 2024Updated 2 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆180Oct 20, 2024Updated last year
- A genome completeness evaluation tool based on miniprot☆262Aug 17, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Program for aligning DNA sequences, a pairwise aligner.☆252May 20, 2026Updated 3 months ago
- Evaluating genome assemblies☆125Mar 3, 2026Updated 6 months ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆98Nov 23, 2024Updated last year
- Fast and accurately polish the genome generated by long reads.☆246Jan 9, 2025Updated last year
- PECAT, a phased error correct and assembly tool☆68Dec 8, 2025Updated 8 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 4 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆222Aug 27, 2026Updated last week
- The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.☆230Nov 25, 2022Updated 3 years ago
- Validate and edit small eukaryotic genome assemblies☆32Apr 28, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆253Dec 16, 2025Updated 8 months ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆397Feb 13, 2025Updated last year
- Minia is a short-read assembler based on a de Bruijn graph☆80Dec 27, 2024Updated last year
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆302May 9, 2024Updated 2 years ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆469Jun 17, 2026Updated 2 months ago
- Mummer alignment tool☆574Feb 4, 2025Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆220Jan 17, 2024Updated 2 years ago