Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
☆173Apr 14, 2025Updated 10 months ago
Alternatives and similar repositories for redundans
Users that are interested in redundans are comparing it to the libraries listed below
Sorting:
- Fast genome analysis from unassembled short reads☆313Apr 8, 2024Updated last year
- haplotypic duplication identification tool☆275Oct 30, 2025Updated 4 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆233Sep 6, 2024Updated last year
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆207Nov 18, 2022Updated 3 years ago
- k-mer based assembly evaluation☆339Jun 28, 2024Updated last year
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆90Nov 23, 2024Updated last year
- Chromosome-level scaffolding using multiple references☆165Sep 8, 2024Updated last year
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆292Feb 25, 2026Updated last week
- Tools for fast and flexible genome assembly scaffolding and improvement☆559Feb 14, 2024Updated 2 years ago
- A genomic k-mer counter (and sequence utility) with nice features.☆160Jul 4, 2025Updated 8 months ago
- software tools for haplotype assembly from sequence data☆229Feb 9, 2025Updated last year
- Find, circularise and annotate mitogenome from PacBio assemblies☆191May 11, 2025Updated 9 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188May 17, 2024Updated last year
- Synteny and Rearrangement Identifier☆448Apr 29, 2025Updated 10 months ago
- A genome completeness evaluation tool based on miniprot☆235Sep 18, 2025Updated 5 months ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Apr 1, 2025Updated 11 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Jan 27, 2025Updated last year
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆215Updated this week
- PECAT, a phased error correct and assembly tool☆59Dec 8, 2025Updated 2 months ago
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 2 years ago
- Reference-free profiling of polyploid genomes☆141Oct 2, 2025Updated 5 months ago
- Program for aligning DNA sequences, a pairwise aligner.☆240Jun 16, 2025Updated 8 months ago
- Fast and accurate de novo assembler for long reads☆398May 10, 2024Updated last year
- Fast and accurately polish the genome generated by long reads.☆240Jan 9, 2025Updated last year
- base-accurate DNA sequence alignments using WFA and mashmap3☆210Jan 30, 2026Updated last month
- A tool for evaluating long-read de novo assembly results☆52Aug 25, 2024Updated last year
- ☆45Dec 11, 2016Updated 9 years ago
- Tool to plot synteny and structural rearrangements between genomes☆342Apr 7, 2025Updated 10 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆248Dec 16, 2025Updated 2 months ago
- ☆270Jun 26, 2025Updated 8 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆296May 9, 2024Updated last year
- Evaluating genome assemblies☆115Jan 11, 2026Updated last month
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆238Dec 29, 2023Updated 2 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆104Jul 23, 2024Updated last year
- De novo genome assembler for long uncorrected reads☆229Nov 15, 2023Updated 2 years ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Jan 2, 2024Updated 2 years ago
- Version 5 of the CAFE phylogenetics software☆161Feb 12, 2025Updated last year
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆211Aug 21, 2024Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆212Jan 17, 2024Updated 2 years ago