Gabaldonlab / redundansLinks
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
☆157Updated 5 months ago
Alternatives and similar repositories for redundans
Users that are interested in redundans are comparing it to the libraries listed below
Sorting:
- haplotypic duplication identification tool☆259Updated last year
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆220Updated last year
- A genome completeness evaluation tool based on miniprot☆222Updated 2 weeks ago
- Fast and accurately polish the genome generated by long reads.☆235Updated 9 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆188Updated 4 months ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆145Updated 2 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆210Updated 3 months ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆181Updated 3 weeks ago
- Comparison of multiple long read datasets☆143Updated last month
- A genomic k-mer counter (and sequence utility) with nice features.☆144Updated 3 months ago
- Nanopore data assembler☆161Updated 3 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆150Updated 2 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆237Updated last year
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated 11 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆204Updated 2 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆209Updated last year
- Version 5 of the CAFE phylogenetics software☆149Updated 7 months ago
- ☆212Updated last week
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆176Updated 5 months ago
- Create statistic summary of an Oxford Nanopore read dataset☆123Updated 2 years ago
- Ultra-fast de novo assembler using long noisy reads☆133Updated 4 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆227Updated last year
- Evaluation and polishing workflows for T2T genome assemblies☆137Updated 3 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆190Updated last year
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆147Updated 8 months ago
- Jasmine: SV Merging Across Samples☆227Updated 9 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆200Updated last week
- Fast genome analysis from unassembled short reads☆297Updated last year