Alternatives and similar repositories for redundans

Users that are interested in redundans are comparing it to the libraries listed below

• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆174Updated 4 years ago
• dfguan / purge_dups
  haplotypic duplication identification tool
  ☆269Updated last month
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆162Updated 3 years ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆238Updated 11 months ago
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆207Updated 3 years ago
• BGI-Qingdao / TGS-GapCloser
  A gap-closing software tool that uses long reads to enhance genome assembly.
  ☆225Updated last year
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆228Updated 2 months ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆188Updated last year
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆145Updated 4 months ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆190Updated 6 months ago
• lh3 / gfatools
  Tools for manipulating sequence graphs in the GFA and rGFA formats
  ☆242Updated last year
• ruanjue / smartdenovo
  Ultra-fast de novo assembler using long noisy reads
  ☆135Updated 4 years ago
• oushujun / LTR_retriever
  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…
  ☆214Updated 5 months ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆159Updated 9 months ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆210Updated last year
• aaranyue / quarTeT
  A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification
  ☆158Updated last month
• VGP / vgp-assembly
  VGP repository for the genome assembly working group
  ☆193Updated 6 months ago
• wdecoster / chopper
  ☆220Updated this week
• cgroza / GraffiTE
  GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …
  ☆211Updated last week
• marbl / ModDotPlot
  ☆175Updated last month
• lbcb-sci / racon
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
  ☆230Updated last year
• Dfam-consortium / RepeatModeler
  De-Novo Repeat Discovery Tool
  ☆227Updated 4 months ago
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆148Updated 5 months ago
• tangerzhang / ALLHiC
  ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
  ☆177Updated last year
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆172Updated 4 years ago
• lh3 / yak
  Yet another k-mer analyzer
  ☆152Updated last week
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆232Updated 11 months ago
• baoxingsong / AnchorWave
  Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
  ☆182Updated last month
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆155Updated 9 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆200Updated 3 months ago