mmcco / RepeatScout
The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at http://bix.ucsd.edu/repeatscout/
☆14Updated 2 years ago
Alternatives and similar repositories for RepeatScout:
Users that are interested in RepeatScout are comparing it to the libraries listed below
- Improved Inference of Ortholog Groups using Hidden Markov Models☆33Updated last month
- ☆28Updated 4 years ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Updated 6 years ago
- A program for divvying or partially filtering multiple sequence alignments☆25Updated 5 years ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆30Updated 6 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- MIRA sequence assembler☆29Updated 3 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆29Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆30Updated 4 months ago
- ☆26Updated 4 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆20Updated 2 years ago
- This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the …☆14Updated last year
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- ☆26Updated 3 years ago
- ☆16Updated 5 months ago
- Find Unique genomic Regions☆29Updated 3 weeks ago
- Protein Alignment and Detection Interface☆61Updated last year
- ☆20Updated 3 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆31Updated 3 weeks ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆57Updated 11 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆44Updated 8 months ago
- MFannot is a program for the annotation of mitochondrial and plastid genomes☆21Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- ☆24Updated this week
- Genome-Genome circle synteny☆25Updated last year
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆32Updated last year
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆21Updated 5 months ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- An R package to infer and analyze synteny networks from protein sequences☆29Updated 4 months ago