mmcco / RepeatScoutLinks
The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at http://bix.ucsd.edu/repeatscout/
☆16Updated 2 years ago
Alternatives and similar repositories for RepeatScout
Users that are interested in RepeatScout are comparing it to the libraries listed below
Sorting:
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 5 months ago
- STRIDE: Species Tree Root Inference from Gene Duplication Events☆12Updated 7 years ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆31Updated 6 years ago
- A program for divvying or partially filtering multiple sequence alignments☆27Updated 5 years ago
- Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.☆17Updated 6 years ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 9 months ago
- ☆17Updated last year
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Updated last year
- Repetitive motif detection by Assembly of Repetitive K-mers. RepARK is free for academic and non-profit use. By downloading you agree wit…☆16Updated 11 months ago
- Generating UTRs from SHort Reads☆12Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- Automatically design multiplex PCR primer pairs for diverse templates☆29Updated last year
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- GRAbB (Genome Region Assembly by Baiting) is a program designed to assemble selected regions of the genome or transcriptome using referen…☆13Updated 4 years ago
- AncestralClust☆11Updated last month
- A tool for scanning FASTA protein sequences against a library of Pfam HMMs☆16Updated 3 years ago
- Evolcust retrieves groups of genes that appear clustered together in groups of species☆16Updated 2 years ago
- ☆26Updated 4 years ago
- A pipeline for construction and graphical visualization of annotated pangenome networks.☆17Updated 6 years ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Updated 5 months ago
- ☆24Updated 4 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆35Updated 6 years ago
- Bash scripts and data used in pantranscriptomic paper☆24Updated 2 years ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated last month
- ☆42Updated last year
- A Quality Control filter and parser for NCBI BLAST XML results.☆17Updated 5 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆39Updated 4 months ago
- MIRA sequence assembler☆29Updated 7 months ago
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆17Updated 5 months ago