ThomasDOtto / ILRALinks
Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs, correct homopolymer tracks and circulate plastids. We also have the code preinstalled on a virtual linux machine.
☆13Updated 10 months ago
Alternatives and similar repositories for ILRA
Users that are interested in ILRA are comparing it to the libraries listed below
Sorting:
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- Consensus genome annotation using OMA☆26Updated 2 months ago
- Infering ancestral synteny with hierarchical orthologous groups☆29Updated this week
- ☆28Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆34Updated 2 months ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆21Updated last month
- Improved Phased Assembler☆28Updated 3 years ago
- Generating UTRs from SHort Reads☆12Updated 4 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 6 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated last year
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- A reliable gap filling pipeline for draft genomes☆11Updated 6 years ago
- ☆17Updated 2 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- COsine-based SImilarity Genotyper using pangenomes☆21Updated this week
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated this week
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 5 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Diploid genome assembly analysis tools☆14Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Updated last year
- Genome alignment and synteny plots☆31Updated 2 years ago
- FastK based version of Merqury☆28Updated 3 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆21Updated 4 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆23Updated last year
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 9 months ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 7 months ago