ThomasDOtto / ILRA
Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs, correct homopolymer tracks and circulate plastids. We also have the code preinstalled on a virtual linux machine.
☆10Updated 2 months ago
Alternatives and similar repositories for ILRA:
Users that are interested in ILRA are comparing it to the libraries listed below
- A nextflow pipeline for polishing CLR assemblies☆16Updated last year
- ☆21Updated 5 months ago
- Generating UTRs from SHort Reads☆11Updated 4 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- An R package to infer and analyze synteny networks from protein sequences☆25Updated last month
- ☆19Updated last year
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆12Updated 5 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- transposable element typing pipeline☆17Updated 10 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆27Updated 3 weeks ago
- Scaffolding with assembly likelihood optimization☆20Updated 4 years ago
- a broadly applicable tool for automated gene identification and retrieval☆30Updated last month
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated last year
- Implementation of ToL genome assembly workflows☆20Updated 2 months ago
- Improved Phased Assembler☆27Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆25Updated last month
- Yet another Hi-C scaffolding tool☆18Updated 2 months ago
- ☆24Updated last year
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Updated 6 months ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated last year
- use paired-end transcriptome reads to scaffold genomes☆10Updated 5 years ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- ☆14Updated this week
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- ☆16Updated this week
- A Nextflow pipeline for running synteny analysis.