ThomasDOtto / ILRA
Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs, correct homopolymer tracks and circulate plastids. We also have the code preinstalled on a virtual linux machine.
☆13Updated 6 months ago
Alternatives and similar repositories for ILRA
Users that are interested in ILRA are comparing it to the libraries listed below
Sorting:
- ☆23Updated 8 months ago
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆31Updated last week
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 2 months ago
- Consensus genome annotation using OMA☆24Updated last week
- ☆20Updated last year
- Generating UTRs from SHort Reads☆12Updated 4 years ago
- Genome alignment and synteny plots☆30Updated last year
- ☆18Updated 2 weeks ago
- A tool to filter BUSCO output into single-copy gene files for phylogenomics☆13Updated 9 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Genome size estimation from long read overlaps☆55Updated last month
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last year
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆18Updated 2 weeks ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated 11 months ago
- use paired-end transcriptome reads to scaffold genomes☆11Updated 5 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- ☆16Updated last month
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆38Updated 7 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆21Updated 11 months ago
- convert a blast output to a bed file☆12Updated 9 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆27Updated 3 years ago
- Better Alignments with Translated HMMER☆19Updated this week
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Updated 10 months ago
- Perl and Python scripts allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories☆14Updated last month
- An R package to infer and analyze synteny networks from protein sequences☆30Updated 4 months ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 2 months ago