JustinChu / ntsmLinks
This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to compute the probability that sample are of the same origin to discover incongruent samples or sample swaps.
☆29Updated 6 months ago
Alternatives and similar repositories for ntsm
Users that are interested in ntsm are comparing it to the libraries listed below
Sorting:
- ☆21Updated 3 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated last month
- Kmer Analysis of Pileups for Genotyping☆29Updated last month
- Tandem repeat genotyping with long reads☆28Updated 2 weeks ago
- ☆17Updated last year
- Tumour-only somatic mutation calling using long reads☆26Updated 7 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 6 months ago
- Short Tandem Repeat disease loci resource☆18Updated this week
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 3 weeks ago
- Working space for the GIAB TR benchmarking project☆21Updated 7 months ago
- ☆30Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated 2 months ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆28Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated 8 months ago
- SV calling for diploid assemblies☆27Updated last year
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated last month
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated 10 months ago
- a lexicographically-based GTF/GFF sorter☆34Updated last month
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 11 months ago
- ☆48Updated 11 months ago
- Structural variant benchmark☆17Updated 3 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- python plotly Circos from VCF☆36Updated 11 months ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆19Updated 3 months ago
- Population-wide Deletion Calling☆35Updated last month
- Variant annotation and merging pipeline☆34Updated last week