JustinChu / ntsmLinks
This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to compute the probability that sample are of the same origin to discover incongruent samples or sample swaps.
☆30Updated last year
Alternatives and similar repositories for ntsm
Users that are interested in ntsm are comparing it to the libraries listed below
Sorting:
- Kmer Analysis of Pileups for Genotyping☆35Updated this week
- Tandem repeat genotyping with long reads☆35Updated 4 months ago
- ☆21Updated last week
- ☆19Updated last year
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated last year
- ☆46Updated 2 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 4 months ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆21Updated 10 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 8 months ago
- Easy genomic regions for short-read variant calling☆45Updated 4 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated 2 weeks ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆53Updated 10 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 5 months ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆39Updated 3 months ago
- Genome browser hub for the T2T genomes and resources☆25Updated 4 months ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆46Updated 2 years ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆44Updated 5 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- Population-wide Deletion Calling☆35Updated 9 months ago
- Python wrapper for wavefront alignment using WFA2-lib☆38Updated last year
- A battery of methylation tools for PacBio HiFi reads☆47Updated last month
- A long-read analysis toolbox for cancer and population genomics☆23Updated 6 months ago
- Functions to compare a SV call sets against a truth set.☆30Updated 7 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 9 months ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆40Updated last month
- Implementation of ToL genome assembly workflows☆24Updated last week